Hi Mark,

(1) Does anyone know how to adjust the radius of the cartoon loops?

set cartoon_loop_radius = <value>

(2) Is there a comprehensive list of these variable somewhere on-line or
in the program files that I can access?  I can't find these kind of
details in the on-line manual/reference and I feel stupid asking this kind
of basic question to everyone.

You can define a new function "setting_list" in a .py file (for example "setting_list.py"):

def setting_list():
        list = setting.get_name_list()
        for name in list:
                print "%s => %s" % (name, setting.get_setting_text(name))
cmd.extend('setting_list',setting_list)

then simply type the following from within PyMOL:

        PyMOL> run setting_list.py
        PyMOL> setting_list


Hope this helps - Luca

--------------------------------------------------------
Luca Jovine, Ph.D.
Brookdale Department of Molecular, Cell & Developmental Biology
Mount Sinai School of Medicine
Annenberg Building, Room 25-18
One Gustave L. Levy Place, New York, NY 10029-6574, USA
Voice: +1.212.241-8620  FAX: +1.509.356-2832
E-Mail: lucajov...@mac.com - luca.jov...@mssm.edu
W3: http://www.mssm.edu/students/jovinl02
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