Dear PyMOL users,

Following my previous posting of today about nuccyl, there's a general comment I'd like to make. I apologize in advance if it will seem trivial, but I don't recall reading anything about this on the mailing list, so here it goes.

Somewhat unorthodoxically for a PyMOL-related piece of code, the nuccyl program happens to be written in Perl and not in Python. The reason for this has nothing to do with the relative merits of the two languages, but simply with the fact that I know the former much better (blush).

However, the point I want to make is that, because nuccyl communicates with PyMOL by outputting standard coordinate (.pdb) and PyMOL command (.pml) files, it doesn't really matter in which language it was written. In fact, by outputting a list of PyMOL commands, any programming language could in principle be used to extend PyMOL's functionality.

I am not suggesting at all that users should now start coding for PyMOL in BASIC - naturally, the best way to extend PyMOL remains to write additional program modules in Python. Nevertheless, for people who already write code in languages other than Python, the above strategy might represent a useful alternative (well, until they learn Python anyway!)

Just a thought...

Ciao, Luca

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Luca Jovine, Ph.D.
Brookdale Department of Molecular, Cell & Developmental Biology
Mount Sinai School of Medicine
Annenberg Building, Room 25-18
One Gustave L. Levy Place, New York, NY 10029-6574, USA
Voice: +1.212.241-8620  FAX: +1.509.356-2832
E-Mail: lucajov...@mac.com - luca.jov...@mssm.edu
W3: http://www.mssm.edu/students/jovinl02
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