Hello FINK community,
I have been unable to compile pymol 0.90-2.
I copied pymol.info and pymol.patch from
/sw/fink/10.2/unstable/main/finkinfo/sci/
to
/sw/fink/10.3/local/main/finkinfo/
and ran
fink install pymol
I was told to sudo gcc_select 3
I reran fink install pymol
Here is the last few lines on the terminal. Any help would be greatly
appreciated.
cc -I../layer0 -I../layer1 -I../layer2 -I../layer3 -I../layer4
-I../layer5 -ffast-math -no-cpp-precomp -ansi -Wmissing-prototypes -O3
-funroll-loops -fomit-frame-pointer -I/sw/include -I/sw/includ
hon2.2 -I/sw/include/python2.2/Numeric -I/usr/X11R6/include
-D_HAVE_LIBPNG -D_PYMOL_MODULE -D_PYMOL_NUMPY -I/sw/include -c -o
Block.o Block.c
In file included from /usr/include/libkern/OSByteOrder.h:35,
from /usr/include/mach/ndr.h:93,
from /usr/include/mach/clock_priv.h:7,
from /usr/include/mach/mach_interface.h:37,
from /usr/include/mach/mach.h:62,
from /usr/include/sys/event.h:154,
from /usr/include/sys/select.h:71,
from /sw/include/python2.2/pyport.h:119,
from /sw/include/python2.2/Python.h:62,
from ../layer0/os_python.h:23,
from ../layer5/main.h:19,
from Block.c:20:
/usr/include/libkern/ppc/OSByteOrder.h:42: syntax error before
"uint16_t"
/usr/include/libkern/ppc/OSByteOrder.h:57: syntax error before
"uint32_t"
/usr/include/libkern/ppc/OSByteOrder.h:72: syntax error before
"uint64_t"
/usr/include/libkern/ppc/OSByteOrder.h:93: syntax error before "void"
/usr/include/libkern/ppc/OSByteOrder.h:107: syntax error before "void"
/usr/include/libkern/ppc/OSByteOrder.h:121: syntax error before "void"
/usr/include/libkern/ppc/OSByteOrder.h:143: syntax error before
"uint16_t"
/usr/include/libkern/ppc/OSByteOrder.h:153: syntax error before
"uint32_t"
/usr/include/libkern/ppc/OSByteOrder.h:163: syntax error before
"uint64_t"
In file included from /usr/include/mach/ndr.h:93,
from /usr/include/mach/clock_priv.h:7,
from /usr/include/mach/mach_interface.h:37,
from /usr/include/mach/mach.h:62,
from /usr/include/sys/event.h:154,
from /usr/include/sys/select.h:71,
from /sw/include/python2.2/pyport.h:119,
from /sw/include/python2.2/Python.h:62,
from ../layer0/os_python.h:23,
from ../layer5/main.h:19,
from Block.c:20:
/usr/include/libkern/OSByteOrder.h:49: syntax error before "int32_t"
/usr/include/libkern/OSByteOrder.h:105: syntax error before "uint16_t"
/usr/include/libkern/OSByteOrder.h:115: syntax error before "uint32_t"
/usr/include/libkern/OSByteOrder.h:125: syntax error before "uint64_t"
/usr/include/libkern/OSByteOrder.h:137: syntax error before "void"
/usr/include/libkern/OSByteOrder.h:148: syntax error before "void"
/usr/include/libkern/OSByteOrder.h:159: syntax error before "void"
/usr/include/libkern/OSByteOrder.h:172: syntax error before "uint16_t"
/usr/include/libkern/OSByteOrder.h:182: syntax error before "uint32_t"
/usr/include/libkern/OSByteOrder.h:192: syntax error before "uint64_t"
/usr/include/libkern/OSByteOrder.h:204: syntax error before "void"
/usr/include/libkern/OSByteOrder.h:215: syntax error before "void"
/usr/include/libkern/OSByteOrder.h:226: syntax error before "void"
/usr/include/libkern/OSByteOrder.h:245: syntax error before "uint16_t"
/usr/include/libkern/OSByteOrder.h:254: syntax error before "uint32_t"
/usr/include/libkern/OSByteOrder.h:263: syntax error before "uint64_t"
/usr/include/libkern/OSByteOrder.h:292: syntax error before "uint16_t"
/usr/include/libkern/OSByteOrder.h:301: syntax error before "uint32_t"
/usr/include/libkern/OSByteOrder.h:310: syntax error before "uint64_t"
make[1]: *** [Block.o] Error 1
make: *** [.update] Error 2
### execution of make failed, exit code 2
Failed: compiling pymol-0.90-2 failed
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Scott Classen, Ph.D.
ACS Postdoctoral Fellow
Department of Molecular & Cell Biology
University of California, Berkeley
237 Hildebrand Hall #3206
Berkeley, CA 94720-3206
LAB 510.643.9491
FAX 510.643.9290
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
