Marcelo, PyMOL doesn't currently do a very good job with a solid solvent accessible surfaced because they aren't smooth like the Connolly surface. But here's what you can do:
show spheres set sphere_solvent,1 or hide spheres show mesh set solvent_mesh,1 now add in show surface for a nice combination of the solvent and molecular surfaces. Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Marcelo Castilho > Sent: Sunday, October 26, 2003 4:04 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] solvent accesible surface > > > Dear all, > > I am new to pymol and appologyze if his is an "easy > question", anyway here it goes; > > Is it possible to change the surface radius in pymol so that > I can represent the solvente accesible surface ? > > By the way, I am running pymol 0.90 under windows XP > > Thanks, > > Marcelo Castilho > > ===== > Marcelo Santos Castilho > tel 016 273 98 68 > R; Américo J. Canhoto 223 Apto 23 Bl 2 > São Carlos CEP 13564-350 > e-mail alternativo: casti...@if.sc.usp.br > > __________________________________ > Do you Yahoo!? > Exclusive Video Premiere - Britney Spears > http://launch.yahoo.com/promos/britneyspears/ > > > > ------------------------------------------------------- > This SF.net email is sponsored by: The SF.net Donation > Program. Do you like what SourceForge.net is doing for the > Open Source Community? Make a contribution, and help us add > new features and functionality. Click here: > http://sourceforge.net/donate/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/p> ymol-users >
