Stephen,
Sorry, the mesh representation right now is limited to rendering
a Cartesian box. The selection controls the size of the box, but all
atoms within the box are currently always shown. I will look into
changing this so that the mesh performs more like the other
representations.
Cheers,
Warren
--
mailto:[email protected]
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
> -----Original Message-----
> From: [email protected] [mailto:pymol-users-
> [email protected]] On Behalf Of Soisson, Stephen Michael
> Sent: Friday, July 18, 2003 3:27 AM
> To: '[email protected]'
> Subject: [PyMOL] mesh question
>
> Hi everyone-
>
> I have two interacting monomers, and have selected the contacting
> resides between them and drawn a solid surface around these selected
> residues on one monomer. This worked fine and I had no problem.
>
> I would now like to draw a mesh surface around the remaining residues
> in the monomer, that is, everything but the contacting residues. No
> matter what selection scheme I try to use, the mesh is always drawn
> around the entire molecule.
>
> For instance:
>
> select contacts=(byres monA and (monB around 4))
> show surface, contacts
>
> show mesh, (monA and (!contacts)) ****mesh is still drawn around whole
> molecule
>
> However, the following command does work to color just the mesh
> surface that is not in contact with the other monomer:
>
> color grey70, (monA and (!contacts))
>
> which leads me to believe that my syntax is correct for the selection.
>
> What am I missing? Is there a way to just show the mesh over a
> certain portion of a molecule?
>
> Many thanks in advance-
>
> Steve
>
> ----------------------------------------------------------------------
> ----
> --
> --
> Stephen M. Soisson, Ph.D.
> Senior Research Biochemist
> X-ray Crystallography / Dept. of Medicinal Chemistry
> Merck Research Laboratories
> P.O. Box 2000, RY50-105
> Rahway, NJ 07065
> Phone: (732) 594-4349
> Fax: (732) 594-5042
> [email protected]
>
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