Dear PyMol community, During analyzing the water structure of a protein I was wondering if PyMol is capable to select buried water molecules. Since the surface waters occupy clefts it would be nice to see if there is a regular distribution inside of the protein as well.
So is it possible to make a selection of buried water molecules? I imagine something in a way like 'water without distance to surface-object'. But so far I didn't have yet such a deep dive into the sophisticated selection capabilities of PyMol and would be lost here. The problem I see arising would be that the surface object is present (as residues) even in protein's interior and make a correct selection impossible. Greetings, Bartholomeus
