Dear Kelley,

> created /tmp and /pdb directories 

It is meant to be in C:\tmp and C:\pdb, just in Unix-style notation. How would 
You say this in Mac?

> I should state that several aspects of the install
> instructions in regard to the directory structures in my system were
> unclear.

In fact, i don't know if anyone has ever used rTools on MacOS before. If there 
is one, could You please write me, how You got it running?

--- debugging ---

> In both versions of Pymol described above, when a simple move command is
> inserted into a script as follows:
>
> mset 1 x100
> mvMove 20-40,x,80
> movie
>
> I get the following error messages:
>
> PyMOL>mset 1 x100
> PyMOL>mvMove 20-40,x,80
> Traceback (most recent call last):
>   File "/Applications/PyMOL/Darwin/modules/pymol/parser.py", line 234, in
> parse
>     exec(com2[nest],pymol_names,pymol_names)
>   File "<string>", line 1
>      mvMove 20-40,x,80
>              ^
>  SyntaxError: invalid syntax

OK, the mvMove command is apparently not known to Your PyMOL. Did You try to 
install it in $PYMOL/modules/pmg_tk/startup/rubor (without the PMGApp.py 
modification)?
When PyMOL starts up, do You get any error messages in the text screen? (press 
ESC).

We are looking forward to help You,

Kristian Rother




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