Of course! Before you load a PDB file, run the command:
set connect_mode,1 You can put this in your ".pymolrc" file if you want this to be the default behavior. Note that with this approach, you'll need to supply ALL connectivity information, even for standard residues. At some point in the future, connect_mode=2 will reference a residue dictionary in ordder to obtain connectivity information. Cheers, Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D. Informatics Manager Sunesis Pharmaceuticals, Inc. 341 Oyster Point Blvd. S. San Francisco, CA 94080 (650)-266-3606 FAX:(650)-266-3501 > -----Original Message----- > From: Vinod Reddy Melapudi [mailto:vi...@reddrum.tamu.edu] > Sent: Friday, February 07, 2003 9:22 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Displaying CONECt bonds only > > > > Hi, > Is there command to by pass the distance based bonding > and use only the CONECT information for bonding. > When I changed the line > SettingSet_i(I,cSetting_connect_mode, 0); > to > SettingSet_i(I,cSetting_connect_mode, 1); > > in layer1/Setting.c and recompile it. > > it seems to do that. But is there a command. > > Thank you in advance, > > Vinod > Bio-Bio Dept, > Texas A&M University > > -------------------------------------------------------------- > ----------------- > > > > ------------------------------------------------------- > This SF.NET email is sponsored by: > SourceForge Enterprise Edition + IBM + LinuxWorld = Something 2 See! > http://www.vasoftware.com > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
