Hi folks:

I just installed a python-based molecular modelling and dynamics program called mmtk and am trying to get it to play nicely with pymol. I can get it to use pymol as the default pdb displayer, but I can't figure out how to make them talk intelligently to one another. For example, if I run a sample program from mmtk within pymol, everything works but then it opens up another pymol window within pymol, which is kind of annoying.

I've only used mmtk for about 37 seconds so I haven't managed to grok it completely, but if there is an obvious quick solution to this please let me know.

BTW if you want to install mmtk via fink on OS X I have an install script here:

http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink_html.html


Thanks in advance.

Bill Scott



William G. Scott

Associate Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA

phone:  +1-831-459-5367 (office)
               +1-831-459-5292 (lab)
fax:         +1-831-4593139  (fax)



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