Okay I found the problem... This fails:
"mpng mov # will create mov0001.png, mov0002.png, etc." but this: "mpng mov # will create mov0001.png, mov0002.png, etc." works fine. The problem is that PyMOL isn't yet 100% tolerant of comments which follow PyMOL commands on the same line. Unfortunately, I can't make the uniform assumption that everything after a "#" is a comment, since "#" is a valid SMILES character, and I need to leave room for SMILES capabilities down the road. For the time being, to be absolutely safe, put comments on their own separate lines in PyMOL command scripts (not Python programs, which are unaffected by this limitation). Sorry for the inconvenience this may cause. Cheers, Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D. Informatics Manager Sunesis Pharmaceuticals, Inc. 341 Oyster Point Blvd. S. San Francisco, CA 94080 (650)-266-3606 FAX:(650)-266-3501 > -----Original Message----- > From: Jennifer Ekstrom [mailto:jekst...@phylos.com] > Sent: Friday, September 13, 2002 9:41 AM > To: 'pymol-users@lists.sourceforge.net' > Subject: [PyMOL] PyMOL movie question > > > Hello, > I'm a new PyMOL user, and am trying to make my first > molecular movie. > > I've inserted the following into my script: > > mset 1 x120 > util.mroll(1,120,1) > set ray_trace_frames=1 > set cache_frames=0 > mclear > mpng mov > > and I'm getting the following output: > > PyMOL>mset 1 x120 > PyMOL>util.mroll(1,120,1) > PyMOL>set ray_trace_frames=1 > Setting: ray_trace_frames set to 1.00000. > PyMOL>set cache_frames=0 > Setting: cache_frames set to 0.00000. > PyMOL>mclear > PyMOL>mpng mov > Traceback (most recent call last): > File "C:\Program Files\DeLano > Scientific\PyMOL/modules\pymol\parser.py", > lin > e 126, in parse > result=apply(kw[nest][0],args[nest],kw_args[nest]) > File "C:\Program Files\DeLano > Scientific\PyMOL/modules\pymol\moving.py", > lin > e 178, in mpng > r = cmd._mpng(prefix,int(first)-1,int(last)-1) > ValueError: invalid literal for int(): mov0002.png > > > Any suggestions? > > Thanks, > Jennifer > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
