Ah, not sure why I couldn't find this before. Looks like it may be a PyCharm issue, though I'm sure they'd be grateful for any guidance... http://youtrack.jetbrains.com/issue/PY-7691
On Wed, May 29, 2013 at 4:58 PM, Barry Wark <ba...@physion.us> wrote: > > > > On Wed, May 29, 2013 at 4:44 PM, Andi Vajda <va...@apache.org> wrote: > >> >> On Wed, 29 May 2013, Barry Wark wrote: >> >> On Wed, May 29, 2013 at 1:53 PM, Andi Vajda <va...@apache.org> wrote: >>> >>> >>>> On Tue, 28 May 2013, Barry Wark wrote: >>>> >>>> On Tue, May 28, 2013 at 11:09 PM, Andi Vajda <va...@apache.org> wrote: >>>> >>>>> >>>>> >>>>> On Tue, 28 May 2013, Barry Wark wrote: >>>>>> >>>>>> Hi all, >>>>>> >>>>>> >>>>>>> This is an edge case, I realize, but thought I'd throw it out there >>>>>>> in >>>>>>> case >>>>>>> anyone has come across a solution. >>>>>>> >>>>>>> I'm using IDEA's PyCharm IDE (v2.7). The project virtualenv contains >>>>>>> a >>>>>>> jcc-compiled module (which the project uses). PyCharm's indexer >>>>>>> crashes >>>>>>> >>>>>>> >>>>>>> Which project ? yours or PyCharm-the-project ? >>>>>> What version of JCC was this module compiled with ? >>>>>> >>>>>> >>>>> >>>>> The project is mine, a python wrapper around Physion's Ovation API. >>>>> We're >>>>> using JCC 2.16. PyCharm is IDEA's Python IDE ( >>>>> http://www.jetbrains.com/****pycharm/<http://www.jetbrains.com/**pycharm/>< >>>>> http://www.jetbrains.com/**pycharm/<http://www.jetbrains.com/pycharm/> >>>>> >). >>>>> >>>>> >>>>> >>>>> >>>>> >>>>>> when indexing this module with the crash report below. When running >>>>>> the >>>>>> >>>>>> project's unit tests in PyCharm, this jcc-compiled module is imported >>>>>>> (and >>>>>>> functions) without issue. PyCharm is a Java app, and I'm sure it's >>>>>>> doing >>>>>>> some Java-Python bridging as well >>>>>>> >>>>>>> >>>>>>> If PyCharm is a Java app, what kind of python bridging is it doing >>>>>> ? And >>>>>> how does that involve JCC ? I'm assuming that if PyCharm is a Java >>>>>> module, >>>>>> its indexing would be implemented in Java too ? >>>>>> >>>>>> >>>>> >>>>> I don't really know how PyCharm handles Java/Python bridging. PyCharm >>>>> is >>>>> built on IDEA's (Java) IDE framework, and it works with Python code. >>>>> It's >>>>> purely speculation on my part that PyCharm's Java/Python bridging (if >>>>> any) >>>>> is involved here. >>>>> >>>>> >>>>> >>>>> >>>>>> , so it's possible there's a conflict that >>>>>> >>>>>> is the root of this crash. If so, I'll gladly file this as a PyCharm >>>>>>> issue, >>>>>>> but though I'd run this by the JCC gurus in case they recognize >>>>>>> what's >>>>>>> going on. I've never seen the PyCharm indexer crash before on modules >>>>>>> that >>>>>>> don't use jcc. >>>>>>> >>>>>>> >>>>>>> What version(s) of JCC are involved here ? >>>>>> >>>>>> >>>>> >>>>> 2.16 on OS X 10.8, Python 2.7. >>>>> >>>>> >>>> So, to paraphrase to make sure I understand this correctly: >>>> - PyCharm is a Java program that can spawn Python processes >>>> >>>> >>> Yes. In particular, it spawns a python process to "index" a python module >>> for code completion >>> >>> >>> - Your python project uses JCC and runs fine by itself >>>> >>>> >>> Yes >>> >>> >>> - Your python project crashes when run under PyCharm >>>> >>>> >>> Almost. My project *runs* fine when spawned under PyCharm, but the >>> PyCharm >>> >>> "indexer" crashes when attempting to index my module built with jcc. >>> >> >> That is not what your stacktrace shows. It's ends up somewhere in your >> jcc-built extension: >> >> >> Thread 0 Crashed:: Dispatch queue: com.apple.main-thread >> 0 _ovation_api.so >> > > Yes, the process spawned by PyCharm to index ovation_api (for code > completion, etc.) crashes in the _ovation_api.so module. A Python program > (e.g. script or unit tests) that import ovation_api (and call initVM(), > etc.) does *not* crash when run at the command line or from within > PyCharm. This issue appears restricted to the python process launched by > PyCharm to "index" the ovation_api module. > > > >> >> Andi.. >> >> One possibility here is that there is a clash of Java VMs. There can only >>>> be one Java VM in a given process. JCC can be embedding a Java VM (the >>>> default case) and it controls and initializes it or JCC can be embedded >>>> inside a existing Java VM (when run inside Tomcat, for example). This >>>> latter feature is not well documented but works fine (see the >>>> PythonVM.java >>>> file in the JCC sources for more information). >>>> >>>> >>> Interesting. The process that crashes is a python child process spawned >>> by >>> PyCharm. I don't know whether there is a JavaVM running in this child >>> process. I looked at the source of PythonVM.java and I don't see any >>> comments/docs about the various embedding options. Can you give me a bit >>> more information? >>> >>> >>> >>> >>>> I don't know how PyCharm controls Python programs, does it embed a >>>> Python >>>> VM ? does it spawn a sub-process ? There could be an issue here. >>>> >>>> >>> It's not transparent to me how PyCharm handles python VMs either. From >>> the >>> crash log, it appears that in this particular case it is spawning a child >>> process. >>> >>> Thank you, >>> Barry >>> >>> >>> >>>> Andi.. >>>> >>>> >>>> Thanks, >>>>> Barry >>>>> >>>>> >>>>> >>>>> >>>>>> Andi.. >>>>>> >>>>>> >>>>>> >>>>>> Thanks, >>>>>> >>>>>>> Barry >>>>>>> >>>>>>> >>>>>>> The Crash Log: >>>>>>> >>>>>>> Process: python [85552] >>>>>>> Path: /Users/USER/*/python >>>>>>> Identifier: python >>>>>>> Version: 60.3 >>>>>>> Code Type: X86-64 (Native) >>>>>>> Parent Process: pycharm [85481] >>>>>>> User ID: 501 >>>>>>> >>>>>>> Date/Time: 2013-05-28 13:35:21.728 -0400 >>>>>>> OS Version: Mac OS X 10.8.3 (12D78) >>>>>>> Report Version: 10 >>>>>>> Sleep/Wake UUID: 45FF7EDE-FE31-4248-B03D-******1EE79118E02F >>>>>>> >>>>>>> >>>>>>> >>>>>>> Interval Since Last Report: 36408 sec >>>>>>> Crashes Since Last Report: 3 >>>>>>> Per-App Crashes Since Last Report: 3 >>>>>>> Anonymous UUID: 5340B35B-8410-1D7A-63C1-** >>>>>>> >>>>>>> 2E05A95E2522 >>>>>>> >>>>>>> Crashed Thread: 0 Dispatch queue: com.apple.main-thread >>>>>>> >>>>>>> Exception Type: EXC_BAD_ACCESS (SIGSEGV) >>>>>>> Exception Codes: KERN_INVALID_ADDRESS at 0x00000000544857bc >>>>>>> >>>>>>> VM Regions Near 0x544857bc: >>>>>>> --> >>>>>>> __TEXT 0000000104484000-******0000000104485000 [ >>>>>>> >>>>>>> 4K] >>>>>>> >>>>>>> r-x/rwx SM=COW /Users/USER/* >>>>>>> >>>>>>> Thread 0 Crashed:: Dispatch queue: com.apple.main-thread >>>>>>> 0 _ovation_api.so 0x000000010509e6c5 JArray<unsigned >>>>>>> char>::JArray(long) + 37 >>>>>>> 1 _ovation_api.so 0x0000000105095250 _jclass* >>>>>>> initializeClass<unsigned char>(bool) + 42 >>>>>>> 2 _ovation_api.so 0x00000001050a290e >>>>>>> JCCEnv::getClass(_jclass* (*)(bool)) const + 18 >>>>>>> 3 _ovation_api.so 0x00000001050a6dd9 >>>>>>> t_descriptor___get__(t_******descriptor*, _object*, _object*) + 66 >>>>>>> >>>>>>> >>>>>>> 4 org.python.python 0x00000001044a13b1 0x10448f000 + >>>>>>> 74673 >>>>>>> 5 org.python.python 0x00000001044a85a9 >>>>>>> PyEval_EvalFrameEx >>>>>>> + >>>>>>> 9244 >>>>>>> 6 org.python.python 0x00000001044a6147 >>>>>>> PyEval_EvalCodeEx + >>>>>>> 1934 >>>>>>> 7 org.python.python 0x00000001044ac8df 0x10448f000 + >>>>>>> 121055 >>>>>>> 8 org.python.python 0x00000001044a863a >>>>>>> PyEval_EvalFrameEx >>>>>>> + >>>>>>> 9389 >>>>>>> 9 org.python.python 0x00000001044ac869 0x10448f000 + >>>>>>> 120937 >>>>>>> 10 org.python.python 0x00000001044a863a >>>>>>> PyEval_EvalFrameEx >>>>>>> + >>>>>>> 9389 >>>>>>> 11 org.python.python 0x00000001044ac869 0x10448f000 + >>>>>>> 120937 >>>>>>> 12 org.python.python 0x00000001044a863a >>>>>>> PyEval_EvalFrameEx >>>>>>> + >>>>>>> 9389 >>>>>>> 13 org.python.python 0x00000001044a6147 >>>>>>> PyEval_EvalCodeEx + >>>>>>> 1934 >>>>>>> 14 org.python.python 0x00000001044ac8df 0x10448f000 + >>>>>>> 121055 >>>>>>> 15 org.python.python 0x00000001044a863a >>>>>>> PyEval_EvalFrameEx >>>>>>> + >>>>>>> 9389 >>>>>>> 16 org.python.python 0x00000001044a6147 >>>>>>> PyEval_EvalCodeEx + >>>>>>> 1934 >>>>>>> 17 org.python.python 0x00000001044a59b3 PyEval_EvalCode >>>>>>> + >>>>>>> 54 >>>>>>> 18 org.python.python 0x00000001044e1c70 0x10448f000 + >>>>>>> 339056 >>>>>>> 19 org.python.python 0x00000001044e1d3c >>>>>>> PyRun_FileExFlags + >>>>>>> 165 >>>>>>> 20 org.python.python 0x00000001044e1726 >>>>>>> PyRun_SimpleFileExFlags + 410 >>>>>>> 21 org.python.python 0x0000000104505e27 Py_Main + 2715 >>>>>>> 22 libdyld.dylib 0x00007fff907047e1 start + 1 >>>>>>> >>>>>>> Thread 0 crashed with X86 Thread State (64-bit): >>>>>>> rax: 0x00007fff78dee180 rbx: 0x00007fff5b77a768 rcx: >>>>>>> 0x0000000054485244 >>>>>>> rdx: 0x00000001053c55b0 >>>>>>> rdi: 0x00007fff78dee180 rsi: 0x0000000000000000 rbp: >>>>>>> 0x00007fff5b77a750 >>>>>>> rsp: 0x00007fff5b77a740 >>>>>>> r8: 0x00007fff5b77a838 r9: 0x00007fff5b77a828 r10: >>>>>>> 0x0000000000000002 >>>>>>> r11: 0x0000000000000003 >>>>>>> r12: 0x000000010465c320 r13: 0x0000000104bd37a0 r14: >>>>>>> 0x0000000000000000 >>>>>>> r15: 0x00007fea32eb2880 >>>>>>> rip: 0x000000010509e6c5 rfl: 0x0000000000010246 cr2: >>>>>>> 0x00000000544857bc >>>>>>> Logical CPU: 1 >>>>>>> >>>>>>> Binary Images: >>>>>>> 0x104484000 - 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0x7fff8fc43ff7 com.apple.CoreServices.** >>>>>>> CarbonCore >>>>>>> (1037.5 - 1037.5) <731D8F92-1C52-3613-BA01-******EFEA54DADF41> >>>>>>> /System/Library/Frameworks/******CoreServices.framework/** >>>>>>> Versions/A/Frameworks/******CarbonCore.framework/Versions/**** >>>>>>> >>>>>>> **A/CarbonCore >>>>>>> >>>>>>> 0x7fff8ff12000 - 0x7fff8ff37ff7 libc++abi.dylib (26) >>>>>>> <D86169F3-9F31-377A-9AF3-******DB17142052E4> >>>>>>> /usr/lib/libc++abi.dylib >>>>>>> >>>>>>> >>>>>>> 0x7fff90432000 - 0x7fff90449fff com.apple.GenerationalStorage >>>>>>> (1.1 >>>>>>> - 132.3) <FD4A84B3-13A8-3C60-A59E-******25A361447A17> >>>>>>> /System/Library/******PrivateFrameworks/**** >>>>>>> GenerationalStorage.framework/****** >>>>>>> >>>>>>> >>>>>>> Versions/A/GenerationalStorage >>>>>>> 0x7fff90604000 - 0x7fff90701fff libsqlite3.dylib (138.1) >>>>>>> <ADE9CB98-D77D-300C-A32A-******556B7440769F> >>>>>>> /usr/lib/libsqlite3.dylib >>>>>>> >>>>>>> >>>>>>> 0x7fff90702000 - 0x7fff90705ff7 libdyld.dylib (210.2.3) >>>>>>> <F59367C9-C110-382B-A695-******9035A6DD387E> >>>>>>> >>>>>>> /usr/lib/system/libdyld.dylib >>>>>>> >>>>>>> 0x7fff90905000 - 0x7fff9090dfff liblaunch.dylib (442.26.2) >>>>>>> <2F71CAF8-6524-329E-AC56-******C506658B4C0C> >>>>>>> /usr/lib/system/liblaunch.** >>>>>>> >>>>>>> >>>>>>> dylib >>>>>>> 0x7fff90911000 - 0x7fff90be2ff7 com.apple.security (7.0 - >>>>>>> 55179.11) <73958084-5BBC-3597-A751-******7370B0C247E5> >>>>>>> /System/Library/Frameworks/******Security.framework/Versions/**A/** >>>>>>> >>>>>>> **Security >>>>>>> >>>>>>> 0x7fff90be3000 - 0x7fff90c64fff com.apple.Metadata (10.7.0 - >>>>>>> 707.5) <4140B1F6-7D73-33C7-B3F2-******4DB349C31AE9> >>>>>>> /System/Library/Frameworks/******CoreServices.framework/** >>>>>>> Versions/A/Frameworks/******Metadata.framework/Versions/A/** >>>>>>> ****Metadata >>>>>>> >>>>>>> >>>>>>> 0x7fff918a4000 - 0x7fff91970ff7 libsystem_c.dylib (825.26) >>>>>>> <4C9EB006-FE1F-3F8F-8074-******DFD94CF2CE7B> >>>>>>> >>>>>>> /usr/lib/system/libsystem_c.** >>>>>>> >>>>>>> dylib >>>>>>> 0x7fff91cd2000 - 0x7fff91e47fff com.apple.CFNetwork (596.3.3 >>>>>>> - >>>>>>> 596.3.3) <3739DC8D-8610-3740-80EC-******43E130779CB8> >>>>>>> /System/Library/Frameworks/******CFNetwork.framework/Versions/***** >>>>>>> >>>>>>> *A/CFNetwork >>>>>>> >>>>>>> 0x7fff9288e000 - 0x7fff928a3ff7 libdispatch.dylib (228.23) >>>>>>> <D26996BF-FC57-39EB-8829-******F63585561E09> >>>>>>> >>>>>>> /usr/lib/system/libdispatch.** >>>>>>> >>>>>>> dylib >>>>>>> 0x7fff92c2f000 - 0x7fff92c2ffff libOpenScriptingUtil.dylib >>>>>>> (148.3) >>>>>>> <F8681222-0969-3B10-8BCE-******C55A4B9C520C> >>>>>>> /usr/lib/libOpenScriptingUtil.****** >>>>>>> >>>>>>> >>>>>>> dylib >>>>>>> 0x7fff92f8a000 - 0x7fff93087ff7 libxml2.2.dylib (22.3) >>>>>>> <47B09CB2-C636-3024-8B55-******6040F7829B4C> >>>>>>> /usr/lib/libxml2.2.dylib >>>>>>> >>>>>>> >>>>>>> 0x7fff93a97000 - 0x7fff93a9fff7 libsystem_dnssd.dylib >>>>>>> (379.37) >>>>>>> <616FC901-151E-38BF-B2C4-******24A351C5FAAD> >>>>>>> /usr/lib/system/libsystem_** >>>>>>> >>>>>>> >>>>>>> dnssd.dylib >>>>>>> 0x7fff93aa0000 - 0x7fff93aafff7 libxar.1.dylib (105) >>>>>>> <370ED355-E516-311E-BAFD-******D80633A84BE1> /usr/lib/libxar.1.dylib >>>>>>> >>>>>>> >>>>>>> 0x7fff93ab0000 - 0x7fff93ae6fff libsystem_info.dylib (406.17) >>>>>>> <4FFCA242-7F04-365F-87A6-******D4EFB89503C1> >>>>>>> /usr/lib/system/libsystem_** >>>>>>> >>>>>>> >>>>>>> info.dylib >>>>>>> 0x7fff93b14000 - 0x7fff93b18fff libpam.2.dylib (20) >>>>>>> <C8F45864-5B58-3237-87E1-******2C258A1D73B8> /usr/lib/libpam.2.dylib >>>>>>> >>>>>>> >>>>>>> 0x7fff93ba4000 - 0x7fff93c12fff com.apple.framework.IOKit >>>>>>> (2.0.1 - >>>>>>> 755.22.5) <1547DA6F-9793-30A2-8E92-******7368DE84D46C> >>>>>>> /System/Library/Frameworks/******IOKit.framework/Versions/A/**** >>>>>>> **IOKit >>>>>>> >>>>>>> >>>>>>> 0x7fff9400b000 - 0x7fff94011fff libmacho.dylib (829) >>>>>>> <BF332AD9-E89F-387E-92A4-******6E1AB74BD4D9> >>>>>>> >>>>>>> /usr/lib/system/libmacho.dylib >>>>>>> >>>>>>> 0x7fff94012000 - 0x7fff9401fff7 com.apple.NetAuth (4.0 - 4.0) >>>>>>> <F5BC7D7D-AF28-3C83-A674-******DADA48FF7810> >>>>>>> /System/Library/******PrivateFrameworks/NetAuth.** >>>>>>> >>>>>>> >>>>>>> framework/Versions/A/NetAuth >>>>>>> 0x7fff941cf000 - 0x7fff941d3ff7 com.apple.TCC (1.0 - 1) >>>>>>> <F2F3B753-FC73-3543-8BBE-******859FDBB4D6A6> >>>>>>> /System/Library/******PrivateFrameworks/TCC.****** >>>>>>> framework/Versions/A/TCC >>>>>>> >>>>>>> >>>>>>> 0x7fff941d4000 - 0x7fff941d5fff libsystem_blocks.dylib (59) >>>>>>> <D92DCBC3-541C-37BD-AADE-******ACC75A0C59C8> >>>>>>> /usr/lib/system/libsystem_******blocks.dylib >>>>>>> >>>>>>> >>>>>>> 0x7fff941f4000 - 0x7fff941fffff libsystem_notify.dylib (98.5) >>>>>>> <C49275CC-835A-3207-AFBA-******8C01374927B6> >>>>>>> /usr/lib/system/libsystem_******notify.dylib >>>>>>> >>>>>>> 0x7fff9471e000 - 0x7fff9471ffff >>>>>>> libDiagnosticMessagesClient.** >>>>>>> dylib >>>>>>> (8) <8548E0DC-0D2F-30B6-B045-******FE8A038E76D8> >>>>>>> /usr/lib/******libDiagnosticMessagesClient.******dylib >>>>>>> >>>>>>> >>>>>>> >>>>>>> External Modification Summary: >>>>>>> Calls made by other processes targeting this process: >>>>>>> task_for_pid: 0 >>>>>>> thread_create: 0 >>>>>>> thread_set_state: 0 >>>>>>> Calls made by this process: >>>>>>> task_for_pid: 0 >>>>>>> thread_create: 0 >>>>>>> thread_set_state: 0 >>>>>>> Calls made by all processes on this machine: >>>>>>> task_for_pid: 10466 >>>>>>> thread_create: 1 >>>>>>> thread_set_state: 0 >>>>>>> >>>>>>> VM Region Summary: >>>>>>> ReadOnly portion of Libraries: Total=90.9M resident=34.5M(38%) >>>>>>> swapped_out_or_unallocated=56.******3M(62%) >>>>>>> >>>>>>> >>>>>>> Writable regions: Total=26.2M written=9932K(37%) resident=11.6M(44%) >>>>>>> swapped_out=0K(0%) unallocated=14.6M(56%) >>>>>>> >>>>>>> REGION TYPE VIRTUAL >>>>>>> =========== ======= >>>>>>> MALLOC 17.3M >>>>>>> MALLOC guard page 32K >>>>>>> STACK GUARD 56.0M >>>>>>> Stack 8192K >>>>>>> VM_ALLOCATE 4K >>>>>>> __DATA 4188K >>>>>>> __LINKEDIT 55.4M >>>>>>> __TEXT 35.5M >>>>>>> __UNICODE 544K >>>>>>> shared memory 12K >>>>>>> =========== ======= >>>>>>> TOTAL 176.8M >>>>>>> >>>>>>> Model: MacBookPro5,5, BootROM MBP55.00AC.B03, 2 processors, Intel >>>>>>> Core 2 >>>>>>> Duo, 2.26 GHz, 4 GB, SMC 1.47f2 >>>>>>> Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB >>>>>>> Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1067 MHz, 0x802C, >>>>>>> 0x31364A53463235363634485A2D31******47314631 >>>>>>> >>>>>>> >>>>>>> Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1067 MHz, 0x802C, >>>>>>> 0x31364A53463235363634485A2D31******47314631 >>>>>>> AirPort: spairport_wireless_card_type_******airport_extreme (0x14E4, >>>>>>> >>>>>>> 0x8D), >>>>>>> >>>>>>> Broadcom BCM43xx 1.0 (5.106.98.100.16) >>>>>>> Bluetooth: Version 4.1.3f3 11349, 2 service, 18 devices, 1 incoming >>>>>>> serial >>>>>>> ports >>>>>>> Network Service: AirPort, AirPort, en1 >>>>>>> Serial ATA Device: APPLE SSD TS256A, 251 GB >>>>>>> Serial ATA Device: HL-DT-ST DVDRW GS23N >>>>>>> USB Device: Built-in iSight, apple_vendor_id, 0x8507, 0x24400000 / 2 >>>>>>> USB Device: Internal Memory Card Reader, apple_vendor_id, 0x8403, >>>>>>> 0x26500000 / 2 >>>>>>> USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, >>>>>>> 0x0236, >>>>>>> 0x04600000 / 3 >>>>>>> USB Device: IR Receiver, apple_vendor_id, 0x8242, 0x04500000 / 2 >>>>>>> USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, >>>>>>> 0x06100000 >>>>>>> / 2 >>>>>>> USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x8213, >>>>>>> 0x06110000 / 3 >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>> >>> >
