You can add a separate tls_config key at the top level of the scrape job,. 
This controls TLS used for https scrapes (as opposed to service discovery). 
See:

https://prometheus.io/docs/prometheus/latest/configuration/configuration/#scrape_config
https://prometheus.io/docs/prometheus/latest/configuration/configuration/#tls_config

Hence:

- job_name: "grafana"
consul_sd_configs:
- server: "consul.service.consul:8500"
services:
- grafana
scheme: https
tls_config:
insecure_skip_verify: true
relabel_configs:
- source_labels: [__meta_consul_node]
target_label: hostname
- target_label: __scheme__
replacement: https
* tls_config:*
* insecure_skip_verify: true*

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