I can confirm the issue on my system (Debian unstable, pulseaudio 4.0-6+b1). It has appeared relatively recently.
I run pulseaudio as part of my Xmonad session (with start-pulseaudio-x11 and PULSEAUDIO_SYSTEM_START=0 in /etc/default/pulseaudio). Killing pulseaudio solves the issue temporarily. I've had that happen when games were running, other times when streaming Youtube HTML5 videos. Cheers, Emm
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