This is an automated email from the git hooks/post-receive script.
sebastic pushed a change to branch upstream
in repository pysal.
from 7de8a1a Imported Upstream version 1.10+dfsg
new b4b8900 Imported Upstream version 1.11.0
new b37e648 Imported Upstream version 1.11.1
new 776b952 Imported Upstream version 1.11.2
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.github/CONTRIBUTING.md | 2 +
.github/ISSUE_TEMPLATE.md | 30 +
.github/PULL_REQUEST_TEMPLATE.md | 12 +
.gitignore | 24 +
.travis.yml | 29 +-
.travis_testing.sh | 5 +
CHANGELOG.txt | 2530 +
README.md | 106 -
README.rst | 139 +
THANKS.txt | 1 +
doc/source/conf.py | 57 +-
doc/source/developers/guidelines.rst | 38 +-
doc/source/developers/projects.rst | 5 +-
doc/source/developers/py3k.rst | 107 +-
doc/source/developers/release.rst | 55 +-
doc/source/index.rst | 4 +-
doc/source/library/contrib/index.rst | 20 +-
doc/source/library/spreg/index.rst | 1 +
doc/source/references.rst | 1 +
doc/source/users/installation.rst | 2 +-
figs/lisamaps.png | Bin 0 -> 501034 bytes
figs/lisamaps7.png | Bin 0 -> 501034 bytes
pysal/COPYING | 2 +-
pysal/__init__.py | 24 +-
pysal/cg/kdtree.py | 74 +-
pysal/cg/shapes.py | 14 +-
pysal/cg/tests/test_geoJSON.py | 28 +
pysal/common.py | 13 +
pysal/contrib/{README => README.rst} | 38 +-
pysal/contrib/clusterpy/__init__.py | 1 +
pysal/contrib/clusterpy/clusterpy.ipynb | 6735 +-
pysal/contrib/clusterpy/clusterpy_ext.py | 52 +-
pysal/contrib/githooks/pre-commit | 6 +
pysal/contrib/handler/Explaining the Handler.ipynb | 800 +
pysal/contrib/handler/__init__.py | 1 +
pysal/contrib/handler/handler.py | 146 +
pysal/contrib/handler/registry.py | 58 +
.../handler}/tests/test_diagnostics.py | 11 +-
.../handler}/tests/test_diagnostics_sp.py | 11 +-
.../handler}/tests/test_diagnostics_tsls.py | 11 +-
pysal/contrib/handler/tests/test_error_sp.py | 178 +
.../handler}/tests/test_error_sp_regimes.py | 36 +-
.../contrib/handler/tests/test_error_sp_sparse.py | 189 +
.../handler/tests/test_error_spet.py} | 200 +-
.../handler/tests/test_error_spet_regimes.py} | 12 +-
.../handler/tests/test_error_spet_sparse.py} | 204 +-
.../handler/tests/test_error_spom.py} | 157 +-
.../handler/tests/test_error_spom_regimes.py} | 37 +-
.../handler/tests/test_error_spom_sparse.py} | 159 +-
.../handler}/tests/test_ml_error.py | 43 +-
.../handler}/tests/test_ml_error_regimes.py | 66 +-
.../handler}/tests/test_ml_lag.py | 7 +-
.../handler}/tests/test_ml_lag_regimes.py | 10 +-
.../handler/tests/test_ols.py} | 30 +-
.../handler}/tests/test_ols_regimes.py | 10 +-
.../handler}/tests/test_ols_sparse.py | 22 +-
pysal/contrib/handler/tests/test_probit.py | 62 +
.../handler}/tests/test_twosls.py | 102 +-
.../handler}/tests/test_twosls_regimes.py | 10 +-
.../handler}/tests/test_twosls_sp.py | 165 +-
.../handler}/tests/test_twosls_sp_regimes.py | 10 +-
.../handler}/tests/test_twosls_sp_sparse.py | 166 +-
.../handler}/tests/test_twosls_sparse.py | 103 +-
pysal/contrib/pdutilities/__init__.py | 4 +
pysal/contrib/pdutilities/dbf_utilities.py | 4 -
pysal/contrib/pdutilities/file_utilities.py | 65 +
pysal/contrib/pdutilities/shp_utilities.py | 21 +
pysal/contrib/viz/folium_mapping.ipynb | 2116 +-
pysal/contrib/viz/folium_mapping.py | 14 +-
pysal/contrib/viz/mapping.py | 63 +-
pysal/contrib/viz/mapping_guide.ipynb | 642 +-
pysal/core/IOHandlers/arcgis_swm.py | 4 +-
pysal/core/IOHandlers/csvWrapper.py | 5 +-
pysal/core/IOHandlers/pyDbfIO.py | 35 +-
pysal/core/IOHandlers/pyShpIO.py | 6 +-
pysal/core/IOHandlers/tests/test_csvWrapper.py | 10 +-
pysal/core/IOHandlers/tests/test_pyDbfIO.py | 50 +-
pysal/core/IOHandlers/wk1.py | 2 +-
pysal/core/Tables.py | 49 +-
pysal/core/util/shapefile.py | 32 +-
pysal/core/util/tests/test_shapefile.py | 27 +-
pysal/core/util/wkb.py | 230 +
pysal/core/util/wkt.py | 8 -
pysal/esda/gamma.py | 20 +-
pysal/esda/mapclassify.py | 538 +-
pysal/esda/moran.py | 266 +-
pysal/esda/smoothing.py | 16 +-
pysal/esda/tests/test_mapclassify.py | 66 +-
pysal/esda/tests/test_moran.py | 32 +-
pysal/examples/10740/10740.dbf | Bin 0 -> 8188 bytes
pysal/examples/10740/10740.shp | Bin 0 -> 521068 bytes
pysal/examples/10740/10740.shx | Bin 0 -> 1660 bytes
pysal/examples/10740/10740_queen.gal | 391 +
pysal/examples/10740/10740_rook.gal | 391 +
pysal/examples/10740/README.md | 13 +
pysal/examples/Line/Line.dbf | Bin 0 -> 621 bytes
pysal/examples/Line/Line.prj | 1 +
pysal/examples/Line/Line.shp | Bin 0 -> 564 bytes
pysal/examples/Line/Line.shx | Bin 0 -> 132 bytes
pysal/examples/Line/README.md | 7 +
pysal/examples/Point/Point.dbf | Bin 0 -> 1236 bytes
pysal/examples/Point/Point.prj | 1 +
pysal/examples/Point/Point.shp | Bin 0 -> 352 bytes
pysal/examples/Point/Point.shx | Bin 0 -> 172 bytes
pysal/examples/Polygon/Polygon.dbf | Bin 0 -> 498 bytes
pysal/examples/Polygon/Polygon.prj | 1 +
pysal/examples/Polygon/Polygon.shp | Bin 0 -> 992 bytes
pysal/examples/Polygon/Polygon.shx | Bin 0 -> 124 bytes
pysal/examples/Polygon/README.md | 7 +
pysal/examples/README.txt | 5 +
pysal/examples/__init__.py | 77 +
pysal/examples/arcgis/README.md | 7 +
pysal/examples/arcgis/arcgis_ohio.dbf | Bin 0 -> 21876 bytes
pysal/examples/arcgis/arcgis_txt.txt | 9 +
pysal/examples/baltim/README.md | 16 +
pysal/examples/baltim/baltim.dbf | Bin 0 -> 31595 bytes
pysal/examples/baltim/baltim.shp | Bin 0 -> 6008 bytes
.../crimes.shx => examples/baltim/baltim.shx} | Bin 2396 -> 1788 bytes
pysal/examples/baltim/baltim.tri.k12.kwt | 2744 +
pysal/examples/baltim/baltim_k4.gwt | 845 +
pysal/examples/baltim/baltim_q.gal | 423 +
pysal/examples/baltim/baltimore.geojson | 218 +
pysal/examples/book/README.md | 10 +
pysal/examples/book/book.gal | 33 +
pysal/examples/book/book.txt | 18 +
pysal/examples/burkitt/README.md | 11 +
pysal/examples/burkitt/burkitt.dbf | Bin 0 -> 7558 bytes
pysal/examples/burkitt/burkitt.shp | Bin 0 -> 5364 bytes
.../crimes.shx => examples/burkitt/burkitt.shx} | Bin 2396 -> 1604 bytes
pysal/examples/calemp/README.md | 15 +
pysal/examples/calemp/calempdensity.csv | 59 +
pysal/examples/chicago/Chicago77.dbf | Bin 0 -> 16787 bytes
pysal/examples/chicago/Chicago77.shp | Bin 0 -> 687568 bytes
pysal/examples/chicago/Chicago77.shx | Bin 0 -> 716 bytes
pysal/examples/chicago/README.md | 11 +
pysal/examples/columbus/columbus.dbf | Bin 0 -> 10082 bytes
pysal/examples/columbus/columbus.gal | 99 +
pysal/examples/columbus/columbus.html | 132 +
pysal/examples/columbus/columbus.json | 104 +
pysal/examples/columbus/columbus.shp | Bin 0 -> 21980 bytes
pysal/examples/columbus/columbus.shx | Bin 0 -> 492 bytes
pysal/examples/desmith/README.md | 13 +
pysal/examples/desmith/desmith.gal | 21 +
pysal/examples/desmith/desmith.txt | 12 +
.../examples.rst => pysal/examples/examples.txt | 1 -
pysal/examples/geodanet/README.md | 26 +
.../network => examples/geodanet}/crimes.dbf | Bin
pysal/examples/geodanet/crimes.prj | 1 +
pysal/examples/geodanet/crimes.sbn | Bin 0 -> 3228 bytes
pysal/examples/geodanet/crimes.sbx | Bin 0 -> 428 bytes
.../network => examples/geodanet}/crimes.shp | Bin
pysal/examples/geodanet/crimes.shp.xml | 3 +
.../network => examples/geodanet}/crimes.shx | Bin
pysal/examples/geodanet/schools.dbf | Bin 0 -> 146 bytes
pysal/examples/geodanet/schools.prj | 1 +
pysal/examples/geodanet/schools.sbn | Bin 0 -> 212 bytes
pysal/examples/geodanet/schools.sbx | Bin 0 -> 124 bytes
pysal/examples/geodanet/schools.shp | Bin 0 -> 324 bytes
pysal/examples/geodanet/schools.shp.xml | 546 +
pysal/examples/geodanet/schools.shx | Bin 0 -> 164 bytes
.../network => examples/geodanet}/streets.dbf | Bin
pysal/examples/geodanet/streets.prj | 1 +
pysal/examples/geodanet/streets.sbn | Bin 0 -> 3388 bytes
pysal/examples/geodanet/streets.sbx | Bin 0 -> 540 bytes
.../network => examples/geodanet}/streets.shp | Bin
.../network => examples/geodanet}/streets.shx | Bin
pysal/examples/juvenile/README.md | 14 +
pysal/examples/juvenile/juvenile.dbf | Bin 0 -> 4834 bytes
pysal/examples/juvenile/juvenile.gwt | 2803 +
pysal/examples/juvenile/juvenile.shp | Bin 0 -> 4804 bytes
.../crimes.shx => examples/juvenile/juvenile.shx} | Bin 2396 -> 1444 bytes
pysal/examples/mexico/README.md | 15 +
pysal/examples/mexico/mexico.csv | 33 +
pysal/examples/mexico/mexico.gal | 65 +
pysal/examples/nat/NAT.dbf | Bin 0 -> 2501092 bytes
pysal/examples/nat/NAT.shp | Bin 0 -> 1462216 bytes
pysal/examples/nat/NAT.shx | Bin 0 -> 24780 bytes
pysal/examples/nat/nat.geojson | 3092 +
pysal/examples/nat/nat_queen.gal | 6171 ++
pysal/examples/nat/nat_queen_old.gal | 6171 ++
pysal/examples/nat/nat_trian_k20.kwt | 64786 +++++++++++++++++++
pysal/examples/nat/natregimes.dbf | Bin 0 -> 2627705 bytes
pysal/examples/nat/natregimes.shp | Bin 0 -> 1462216 bytes
pysal/examples/nat/natregimes.shx | Bin 0 -> 24780 bytes
pysal/examples/networks/eberly_net.dbf | Bin 0 -> 1348 bytes
.../networks/eberly_net.shp} | Bin
.../networks/eberly_net.shx} | Bin
.../networks/eberly_net_pts_offnetwork.dbf | Bin 0 -> 2197 bytes
.../networks/eberly_net_pts_offnetwork.shp | Bin 0 -> 2900 bytes
.../networks/eberly_net_pts_offnetwork.shx | Bin 0 -> 900 bytes
.../examples/networks/eberly_net_pts_onnetwork.dbf | Bin 0 -> 1275 bytes
.../examples/networks/eberly_net_pts_onnetwork.shp | Bin 0 -> 3180 bytes
.../examples/networks/eberly_net_pts_onnetwork.shx | Bin 0 -> 980 bytes
pysal/examples/networks/nonplanarsegments.dbf | Bin 0 -> 87 bytes
pysal/examples/networks/nonplanarsegments.prj | 1 +
pysal/examples/networks/nonplanarsegments.qpj | 1 +
pysal/examples/networks/nonplanarsegments.shp | Bin 0 -> 308 bytes
pysal/examples/networks/nonplanarsegments.shx | Bin 0 -> 116 bytes
pysal/examples/newHaven/new_haven_merged.dbf | Bin 0 -> 1320686 bytes
pysal/examples/newHaven/new_haven_merged.shp | Bin 0 -> 92304 bytes
pysal/examples/newHaven/new_haven_merged.shx | Bin 0 -> 26444 bytes
pysal/examples/newHaven/newhaven_nework.dbf | Bin 0 -> 206183 bytes
pysal/examples/newHaven/newhaven_nework.prj | 1 +
pysal/examples/newHaven/newhaven_nework.qpj | 1 +
pysal/examples/newHaven/newhaven_nework.shp | Bin 0 -> 358220 bytes
pysal/examples/newHaven/newhaven_nework.shx | Bin 0 -> 12396 bytes
pysal/examples/sacramento2/sacramentot2.dbf | Bin 0 -> 98149 bytes
pysal/examples/sacramento2/sacramentot2.gal | 807 +
pysal/examples/sacramento2/sacramentot2.sbn | Bin 0 -> 11172 bytes
pysal/examples/sacramento2/sacramentot2.sbx | Bin 0 -> 588 bytes
pysal/examples/sacramento2/sacramentot2.shp | Bin 0 -> 1587812 bytes
pysal/examples/sacramento2/sacramentot2.shx | Bin 0 -> 3324 bytes
pysal/examples/sids2/README.md | 14 +
pysal/examples/sids2/sids2.dbf | Bin 0 -> 23810 bytes
pysal/examples/sids2/sids2.gal | 201 +
pysal/examples/sids2/sids2.html | 124 +
pysal/examples/sids2/sids2.shp | Bin 0 -> 46196 bytes
pysal/examples/sids2/sids2.shx | Bin 0 -> 900 bytes
pysal/examples/sids2/sids2.swm | Bin 0 -> 7168 bytes
pysal/examples/snow_maps/SohoPeople.dbf | Bin 0 -> 3662 bytes
pysal/examples/snow_maps/SohoPeople.prj | 1 +
pysal/examples/snow_maps/SohoPeople.sbn | Bin 0 -> 3460 bytes
pysal/examples/snow_maps/SohoPeople.sbx | Bin 0 -> 380 bytes
pysal/examples/snow_maps/SohoPeople.shp | Bin 0 -> 9172 bytes
.../snow_maps/SohoPeople.shx} | Bin 2396 -> 2692 bytes
pysal/examples/snow_maps/SohoWater.dbf | Bin 0 -> 157 bytes
pysal/examples/snow_maps/SohoWater.prj | 1 +
pysal/examples/snow_maps/SohoWater.sbn | Bin 0 -> 252 bytes
pysal/examples/snow_maps/SohoWater.sbx | Bin 0 -> 124 bytes
pysal/examples/snow_maps/SohoWater.shp | Bin 0 -> 464 bytes
pysal/examples/snow_maps/SohoWater.shx | Bin 0 -> 204 bytes
pysal/examples/snow_maps/Soho_Network.dbf | Bin 0 -> 892 bytes
pysal/examples/snow_maps/Soho_Network.prj | 1 +
pysal/examples/snow_maps/Soho_Network.sbn | Bin 0 -> 1292 bytes
pysal/examples/snow_maps/Soho_Network.sbx | Bin 0 -> 228 bytes
pysal/examples/snow_maps/Soho_Network.shp | Bin 0 -> 11620 bytes
pysal/examples/snow_maps/Soho_Network.shx | Bin 0 -> 1044 bytes
pysal/examples/south/south.dbf | Bin 0 -> 1145962 bytes
pysal/examples/south/south.shp | Bin 0 -> 737448 bytes
pysal/examples/south/south.shx | Bin 0 -> 11396 bytes
pysal/examples/south/south_q.gal | 2825 +
pysal/examples/south/south_queen.gal | 2825 +
pysal/examples/stl/stl.gal | 157 +
pysal/examples/stl/stl_hom.csv | 79 +
pysal/examples/stl/stl_hom.dbf | Bin 0 -> 23280 bytes
pysal/examples/stl/stl_hom.html | 143 +
pysal/examples/stl/stl_hom.shp | Bin 0 -> 28276 bytes
pysal/examples/stl/stl_hom.shx | Bin 0 -> 724 bytes
pysal/examples/stl/stl_hom.txt | 80 +
pysal/examples/stl/stl_hom.wkt | 78 +
pysal/examples/stl/stl_hom_rook.gal | 157 +
pysal/examples/street_net_pts/street_net_pts.dbf | Bin 0 -> 3398 bytes
pysal/examples/street_net_pts/street_net_pts.prj | 1 +
pysal/examples/street_net_pts/street_net_pts.qpj | 1 +
pysal/examples/street_net_pts/street_net_pts.shp | Bin 0 -> 8584 bytes
.../street_net_pts/street_net_pts.shx} | Bin 2396 -> 2524 bytes
pysal/examples/taz/taz.dbf | Bin 0 -> 485344 bytes
pysal/examples/taz/taz.shp | Bin 0 -> 5774828 bytes
pysal/examples/taz/taz.shx | Bin 0 -> 32972 bytes
pysal/examples/test_examples.py | 21 +
pysal/examples/us_income/README.md | 10 +
pysal/examples/us_income/spi_download.csv | 66 +
pysal/examples/us_income/states48.gal | 97 +
pysal/examples/us_income/us48.dbf | Bin 0 -> 4274 bytes
pysal/examples/us_income/us48.shp | Bin 0 -> 186476 bytes
pysal/examples/us_income/us48.shx | Bin 0 -> 484 bytes
pysal/examples/us_income/usjoin.csv | 49 +
pysal/examples/virginia/README.md | 10 +
pysal/examples/virginia/virginia.dbf | Bin 0 -> 11410 bytes
pysal/examples/virginia/virginia.gal | 273 +
pysal/examples/virginia/virginia.json | 143 +
pysal/examples/virginia/virginia.prj | 1 +
pysal/examples/virginia/virginia.shp | Bin 0 -> 71416 bytes
pysal/examples/virginia/virginia.shx | Bin 0 -> 1188 bytes
pysal/examples/virginia/virginia_queen.dat | 586 +
pysal/examples/virginia/virginia_queen.dbf | Bin 0 -> 11850 bytes
pysal/examples/virginia/virginia_queen.gal | 273 +
pysal/examples/virginia/virginia_queen.mat | Bin 0 -> 148160 bytes
pysal/examples/virginia/virginia_queen.mtx | 589 +
pysal/examples/virginia/virginia_queen.swm | Bin 0 -> 9232 bytes
pysal/examples/virginia/virginia_queen.txt | 137 +
pysal/examples/virginia/virginia_queen.wk1 | Bin 0 -> 314585 bytes
pysal/examples/virginia/virginia_rook.gal | 273 +
pysal/examples/wmat/geobugs_scot | 66 +
pysal/examples/wmat/lattice10x10.shp | Bin 0 -> 13700 bytes
pysal/examples/wmat/lattice10x10.shx | Bin 0 -> 900 bytes
pysal/examples/wmat/ohio.swm | Bin 0 -> 6978 bytes
pysal/examples/wmat/rook31.dbf | Bin 0 -> 161 bytes
pysal/examples/wmat/rook31.gal | 7 +
pysal/examples/wmat/rook31.shp | Bin 0 -> 556 bytes
pysal/examples/wmat/rook31.shx | Bin 0 -> 124 bytes
pysal/examples/wmat/spat-sym-us.mat | Bin 0 -> 416 bytes
pysal/examples/wmat/spat-sym-us.wk1 | Bin 0 -> 2221 bytes
pysal/examples/wmat/spdep_listw2WB_columbus | 59 +
pysal/examples/wmat/stata_full.txt | 57 +
pysal/examples/wmat/stata_sparse.txt | 57 +
pysal/examples/wmat/wmat.dat | 232 +
pysal/examples/wmat/wmat.mtx | 237 +
pysal/meta/wmd.py | 80 +-
pysal/network/tests/test_network.py | 5 +-
pysal/region/maxp.py | 26 +-
pysal/region/tests/test_maxp.py | 16 +-
pysal/spatial_dynamics/interaction.py | 4 +-
pysal/spatial_dynamics/markov.py | 12 +-
pysal/spatial_dynamics/tests/test_markov.py | 11 +-
pysal/spreg/__init__.py | 3 +
pysal/spreg/diagnostics.py | 4 +-
pysal/spreg/diagnostics_sur.py | 221 +
pysal/spreg/ml_error.py | 83 +-
pysal/spreg/ml_error_regimes.py | 5 +-
pysal/spreg/ml_lag.py | 72 +-
pysal/spreg/ml_lag_regimes.py | 3 +
pysal/spreg/ols.py | 7 +-
pysal/spreg/opt.py | 92 +
pysal/spreg/optional_imports.ipynb | 278 +
pysal/spreg/probit.py | 322 +-
pysal/spreg/regimes.py | 6 +-
pysal/spreg/summary_output.py | 284 +-
pysal/spreg/sur.py | 697 +
pysal/spreg/sur_error.py | 549 +
pysal/spreg/sur_lag.py | 366 +
pysal/spreg/sur_utils.py | 363 +
pysal/spreg/tests/test_diagnostics.py | 52 +-
pysal/spreg/tests/test_diagnostics_sp.py | 44 +-
pysal/spreg/tests/test_diagnostics_tsls.py | 10 +-
pysal/spreg/tests/test_error_sp.py | 192 +-
pysal/spreg/tests/test_error_sp_het.py | 207 +-
pysal/spreg/tests/test_error_sp_het_regimes.py | 161 +-
pysal/spreg/tests/test_error_sp_het_sparse.py | 207 +-
pysal/spreg/tests/test_error_sp_hom.py | 229 +-
pysal/spreg/tests/test_error_sp_hom_regimes.py | 165 +-
pysal/spreg/tests/test_error_sp_regimes.py | 169 +-
pysal/spreg/tests/test_error_sp_sparse.py | 196 +-
pysal/spreg/tests/test_ml_error.py | 40 +-
pysal/spreg/tests/test_ml_error_regimes.py | 61 +-
pysal/spreg/tests/test_ml_lag.py | 35 +-
pysal/spreg/tests/test_ml_lag_regimes.py | 53 +-
pysal/spreg/tests/test_ols.py | 119 +-
pysal/spreg/tests/test_ols_regimes.py | 108 +-
pysal/spreg/tests/test_ols_sparse.py | 105 +-
pysal/spreg/tests/test_probit.py | 69 +-
pysal/spreg/tests/test_sur.py | 172 +
pysal/spreg/tests/test_sur_error.py | 123 +
pysal/spreg/tests/test_sur_lag.py | 176 +
pysal/spreg/tests/test_twosls.py | 117 +-
pysal/spreg/tests/test_twosls_regimes.py | 86 +-
pysal/spreg/tests/test_twosls_sp.py | 141 +-
pysal/spreg/tests/test_twosls_sp_regimes.py | 144 +-
pysal/spreg/tests/test_twosls_sp_sparse.py | 144 +-
pysal/spreg/tests/test_twosls_sparse.py | 121 +-
pysal/spreg/twosls.py | 17 +-
pysal/spreg/user_output.py | 6 +-
pysal/spreg/utils.py | 132 +-
pysal/version.py | 4 +-
pysal/weights/Contiguity.py | 8 +-
pysal/weights/Distance.py | 74 +-
pysal/weights/_contW_binning.py | 10 +-
pysal/weights/spatial_lag.py | 117 +-
pysal/weights/tests/test_Distance.py | 69 +-
pysal/weights/tests/test_Wsets.py | 28 +-
pysal/weights/tests/test_spatial_lag.py | 28 +-
pysal/weights/tests/test_user.py | 42 +-
pysal/weights/tests/test_util.py | 7 +
pysal/weights/tests/test_weights.py | 69 +-
pysal/weights/user.py | 17 +-
pysal/weights/util.py | 101 +-
pysal/weights/weights.py | 12 +-
setup.py | 61 +-
tools/bump.py | 84 +
tools/spregsync | 47 +
370 files changed, 116631 insertions(+), 8918 deletions(-)
create mode 100644 .github/CONTRIBUTING.md
create mode 100644 .github/ISSUE_TEMPLATE.md
create mode 100644 .github/PULL_REQUEST_TEMPLATE.md
create mode 100644 .travis_testing.sh
delete mode 100644 README.md
create mode 100644 README.rst
create mode 100644 figs/lisamaps.png
create mode 100644 figs/lisamaps7.png
rename pysal/contrib/{README => README.rst} (62%)
create mode 100755 pysal/contrib/githooks/pre-commit
create mode 100644 pysal/contrib/handler/Explaining the Handler.ipynb
create mode 100644 pysal/contrib/handler/__init__.py
create mode 100644 pysal/contrib/handler/handler.py
create mode 100644 pysal/contrib/handler/registry.py
copy pysal/{spreg => contrib/handler}/tests/test_diagnostics.py (94%)
copy pysal/{spreg => contrib/handler}/tests/test_diagnostics_sp.py (95%)
copy pysal/{spreg => contrib/handler}/tests/test_diagnostics_tsls.py (86%)
create mode 100644 pysal/contrib/handler/tests/test_error_sp.py
copy pysal/{spreg => contrib/handler}/tests/test_error_sp_regimes.py (89%)
create mode 100644 pysal/contrib/handler/tests/test_error_sp_sparse.py
copy pysal/{spreg/tests/test_error_sp_het.py =>
contrib/handler/tests/test_error_spet.py} (52%)
copy pysal/{spreg/tests/test_error_sp_het_regimes.py =>
contrib/handler/tests/test_error_spet_regimes.py} (96%)
copy pysal/{spreg/tests/test_error_sp_het_sparse.py =>
contrib/handler/tests/test_error_spet_sparse.py} (52%)
copy pysal/{spreg/tests/test_error_sp_hom.py =>
contrib/handler/tests/test_error_spom.py} (51%)
copy pysal/{spreg/tests/test_error_sp_hom_regimes.py =>
contrib/handler/tests/test_error_spom_regimes.py} (87%)
copy pysal/{spreg/tests/test_error_sp_hom_sparse.py =>
contrib/handler/tests/test_error_spom_sparse.py} (51%)
copy pysal/{spreg => contrib/handler}/tests/test_ml_error.py (66%)
copy pysal/{spreg => contrib/handler}/tests/test_ml_error_regimes.py (71%)
copy pysal/{spreg => contrib/handler}/tests/test_ml_lag.py (94%)
copy pysal/{spreg => contrib/handler}/tests/test_ml_lag_regimes.py (94%)
copy pysal/{spreg/tests/test_ols_sparse.py =>
contrib/handler/tests/test_ols.py} (82%)
copy pysal/{spreg => contrib/handler}/tests/test_ols_regimes.py (96%)
copy pysal/{spreg => contrib/handler}/tests/test_ols_sparse.py (86%)
create mode 100644 pysal/contrib/handler/tests/test_probit.py
copy pysal/{spreg => contrib/handler}/tests/test_twosls.py (59%)
copy pysal/{spreg => contrib/handler}/tests/test_twosls_regimes.py (98%)
copy pysal/{spreg => contrib/handler}/tests/test_twosls_sp.py (55%)
copy pysal/{spreg => contrib/handler}/tests/test_twosls_sp_regimes.py (98%)
copy pysal/{spreg => contrib/handler}/tests/test_twosls_sp_sparse.py (55%)
copy pysal/{spreg => contrib/handler}/tests/test_twosls_sparse.py (59%)
create mode 100644 pysal/contrib/pdutilities/file_utilities.py
create mode 100644 pysal/contrib/pdutilities/shp_utilities.py
create mode 100644 pysal/core/util/wkb.py
create mode 100644 pysal/examples/10740/10740.dbf
create mode 100644 pysal/examples/10740/10740.shp
create mode 100644 pysal/examples/10740/10740.shx
create mode 100644 pysal/examples/10740/10740_queen.gal
create mode 100644 pysal/examples/10740/10740_rook.gal
create mode 100644 pysal/examples/10740/README.md
create mode 100644 pysal/examples/Line/Line.dbf
create mode 100644 pysal/examples/Line/Line.prj
create mode 100644 pysal/examples/Line/Line.shp
create mode 100644 pysal/examples/Line/Line.shx
create mode 100644 pysal/examples/Line/README.md
create mode 100644 pysal/examples/Point/Point.dbf
create mode 100644 pysal/examples/Point/Point.prj
create mode 100644 pysal/examples/Point/Point.shp
create mode 100644 pysal/examples/Point/Point.shx
create mode 100644 pysal/examples/Polygon/Polygon.dbf
create mode 100644 pysal/examples/Polygon/Polygon.prj
create mode 100644 pysal/examples/Polygon/Polygon.shp
create mode 100644 pysal/examples/Polygon/Polygon.shx
create mode 100644 pysal/examples/Polygon/README.md
create mode 100644 pysal/examples/README.txt
create mode 100644 pysal/examples/__init__.py
create mode 100644 pysal/examples/arcgis/README.md
create mode 100644 pysal/examples/arcgis/arcgis_ohio.dbf
create mode 100644 pysal/examples/arcgis/arcgis_txt.txt
create mode 100644 pysal/examples/baltim/README.md
create mode 100644 pysal/examples/baltim/baltim.dbf
create mode 100644 pysal/examples/baltim/baltim.shp
copy pysal/{contrib/network/crimes.shx => examples/baltim/baltim.shx} (71%)
create mode 100644 pysal/examples/baltim/baltim.tri.k12.kwt
create mode 100644 pysal/examples/baltim/baltim_k4.gwt
create mode 100644 pysal/examples/baltim/baltim_q.gal
create mode 100644 pysal/examples/baltim/baltimore.geojson
create mode 100644 pysal/examples/book/README.md
create mode 100644 pysal/examples/book/book.gal
create mode 100644 pysal/examples/book/book.txt
create mode 100644 pysal/examples/burkitt/README.md
create mode 100644 pysal/examples/burkitt/burkitt.dbf
create mode 100644 pysal/examples/burkitt/burkitt.shp
copy pysal/{contrib/network/crimes.shx => examples/burkitt/burkitt.shx} (64%)
create mode 100644 pysal/examples/calemp/README.md
create mode 100644 pysal/examples/calemp/calempdensity.csv
create mode 100644 pysal/examples/chicago/Chicago77.dbf
create mode 100644 pysal/examples/chicago/Chicago77.shp
create mode 100644 pysal/examples/chicago/Chicago77.shx
create mode 100644 pysal/examples/chicago/README.md
create mode 100644 pysal/examples/columbus/columbus.dbf
create mode 100644 pysal/examples/columbus/columbus.gal
create mode 100644 pysal/examples/columbus/columbus.html
create mode 100644 pysal/examples/columbus/columbus.json
create mode 100644 pysal/examples/columbus/columbus.shp
create mode 100644 pysal/examples/columbus/columbus.shx
create mode 100644 pysal/examples/desmith/README.md
create mode 100644 pysal/examples/desmith/desmith.gal
create mode 100644 pysal/examples/desmith/desmith.txt
copy doc/source/users/tutorials/examples.rst => pysal/examples/examples.txt
(98%)
create mode 100644 pysal/examples/geodanet/README.md
copy pysal/{contrib/network => examples/geodanet}/crimes.dbf (100%)
create mode 100644 pysal/examples/geodanet/crimes.prj
create mode 100644 pysal/examples/geodanet/crimes.sbn
create mode 100644 pysal/examples/geodanet/crimes.sbx
copy pysal/{contrib/network => examples/geodanet}/crimes.shp (100%)
create mode 100644 pysal/examples/geodanet/crimes.shp.xml
copy pysal/{contrib/network => examples/geodanet}/crimes.shx (100%)
create mode 100644 pysal/examples/geodanet/schools.dbf
create mode 100644 pysal/examples/geodanet/schools.prj
create mode 100644 pysal/examples/geodanet/schools.sbn
create mode 100644 pysal/examples/geodanet/schools.sbx
create mode 100644 pysal/examples/geodanet/schools.shp
create mode 100644 pysal/examples/geodanet/schools.shp.xml
create mode 100644 pysal/examples/geodanet/schools.shx
copy pysal/{contrib/network => examples/geodanet}/streets.dbf (100%)
create mode 100644 pysal/examples/geodanet/streets.prj
create mode 100644 pysal/examples/geodanet/streets.sbn
create mode 100644 pysal/examples/geodanet/streets.sbx
copy pysal/{contrib/network => examples/geodanet}/streets.shp (100%)
copy pysal/{contrib/network => examples/geodanet}/streets.shx (100%)
create mode 100644 pysal/examples/juvenile/README.md
create mode 100644 pysal/examples/juvenile/juvenile.dbf
create mode 100644 pysal/examples/juvenile/juvenile.gwt
create mode 100644 pysal/examples/juvenile/juvenile.shp
copy pysal/{contrib/network/crimes.shx => examples/juvenile/juvenile.shx} (57%)
create mode 100644 pysal/examples/mexico/README.md
create mode 100644 pysal/examples/mexico/mexico.csv
create mode 100644 pysal/examples/mexico/mexico.gal
create mode 100644 pysal/examples/nat/NAT.dbf
create mode 100644 pysal/examples/nat/NAT.shp
create mode 100644 pysal/examples/nat/NAT.shx
create mode 100644 pysal/examples/nat/nat.geojson
create mode 100644 pysal/examples/nat/nat_queen.gal
create mode 100644 pysal/examples/nat/nat_queen_old.gal
create mode 100644 pysal/examples/nat/nat_trian_k20.kwt
create mode 100644 pysal/examples/nat/natregimes.dbf
create mode 100644 pysal/examples/nat/natregimes.shp
create mode 100644 pysal/examples/nat/natregimes.shx
create mode 100644 pysal/examples/networks/eberly_net.dbf
copy pysal/{contrib/spatialnet/eberly.shp => examples/networks/eberly_net.shp}
(100%)
copy pysal/{contrib/spatialnet/eberly.shx => examples/networks/eberly_net.shx}
(100%)
create mode 100644 pysal/examples/networks/eberly_net_pts_offnetwork.dbf
create mode 100644 pysal/examples/networks/eberly_net_pts_offnetwork.shp
create mode 100644 pysal/examples/networks/eberly_net_pts_offnetwork.shx
create mode 100644 pysal/examples/networks/eberly_net_pts_onnetwork.dbf
create mode 100644 pysal/examples/networks/eberly_net_pts_onnetwork.shp
create mode 100644 pysal/examples/networks/eberly_net_pts_onnetwork.shx
create mode 100644 pysal/examples/networks/nonplanarsegments.dbf
create mode 100644 pysal/examples/networks/nonplanarsegments.prj
create mode 100644 pysal/examples/networks/nonplanarsegments.qpj
create mode 100644 pysal/examples/networks/nonplanarsegments.shp
create mode 100644 pysal/examples/networks/nonplanarsegments.shx
create mode 100644 pysal/examples/newHaven/new_haven_merged.dbf
create mode 100644 pysal/examples/newHaven/new_haven_merged.shp
create mode 100644 pysal/examples/newHaven/new_haven_merged.shx
create mode 100644 pysal/examples/newHaven/newhaven_nework.dbf
create mode 100644 pysal/examples/newHaven/newhaven_nework.prj
create mode 100644 pysal/examples/newHaven/newhaven_nework.qpj
create mode 100644 pysal/examples/newHaven/newhaven_nework.shp
create mode 100644 pysal/examples/newHaven/newhaven_nework.shx
create mode 100644 pysal/examples/sacramento2/sacramentot2.dbf
create mode 100644 pysal/examples/sacramento2/sacramentot2.gal
create mode 100644 pysal/examples/sacramento2/sacramentot2.sbn
create mode 100644 pysal/examples/sacramento2/sacramentot2.sbx
create mode 100644 pysal/examples/sacramento2/sacramentot2.shp
create mode 100644 pysal/examples/sacramento2/sacramentot2.shx
create mode 100644 pysal/examples/sids2/README.md
create mode 100644 pysal/examples/sids2/sids2.dbf
create mode 100644 pysal/examples/sids2/sids2.gal
create mode 100644 pysal/examples/sids2/sids2.html
create mode 100644 pysal/examples/sids2/sids2.shp
create mode 100644 pysal/examples/sids2/sids2.shx
create mode 100644 pysal/examples/sids2/sids2.swm
create mode 100644 pysal/examples/snow_maps/SohoPeople.dbf
create mode 100644 pysal/examples/snow_maps/SohoPeople.prj
create mode 100644 pysal/examples/snow_maps/SohoPeople.sbn
create mode 100644 pysal/examples/snow_maps/SohoPeople.sbx
create mode 100644 pysal/examples/snow_maps/SohoPeople.shp
copy pysal/{contrib/network/crimes.shx => examples/snow_maps/SohoPeople.shx}
(86%)
create mode 100644 pysal/examples/snow_maps/SohoWater.dbf
create mode 100644 pysal/examples/snow_maps/SohoWater.prj
create mode 100644 pysal/examples/snow_maps/SohoWater.sbn
create mode 100644 pysal/examples/snow_maps/SohoWater.sbx
create mode 100644 pysal/examples/snow_maps/SohoWater.shp
create mode 100644 pysal/examples/snow_maps/SohoWater.shx
create mode 100644 pysal/examples/snow_maps/Soho_Network.dbf
create mode 100644 pysal/examples/snow_maps/Soho_Network.prj
create mode 100644 pysal/examples/snow_maps/Soho_Network.sbn
create mode 100644 pysal/examples/snow_maps/Soho_Network.sbx
create mode 100644 pysal/examples/snow_maps/Soho_Network.shp
create mode 100644 pysal/examples/snow_maps/Soho_Network.shx
create mode 100644 pysal/examples/south/south.dbf
create mode 100644 pysal/examples/south/south.shp
create mode 100644 pysal/examples/south/south.shx
create mode 100644 pysal/examples/south/south_q.gal
create mode 100644 pysal/examples/south/south_queen.gal
create mode 100644 pysal/examples/stl/stl.gal
create mode 100644 pysal/examples/stl/stl_hom.csv
create mode 100644 pysal/examples/stl/stl_hom.dbf
create mode 100644 pysal/examples/stl/stl_hom.html
create mode 100644 pysal/examples/stl/stl_hom.shp
create mode 100644 pysal/examples/stl/stl_hom.shx
create mode 100644 pysal/examples/stl/stl_hom.txt
create mode 100644 pysal/examples/stl/stl_hom.wkt
create mode 100644 pysal/examples/stl/stl_hom_rook.gal
create mode 100644 pysal/examples/street_net_pts/street_net_pts.dbf
create mode 100644 pysal/examples/street_net_pts/street_net_pts.prj
create mode 100644 pysal/examples/street_net_pts/street_net_pts.qpj
create mode 100644 pysal/examples/street_net_pts/street_net_pts.shp
copy pysal/{contrib/network/crimes.shx =>
examples/street_net_pts/street_net_pts.shx} (92%)
create mode 100644 pysal/examples/taz/taz.dbf
create mode 100644 pysal/examples/taz/taz.shp
create mode 100644 pysal/examples/taz/taz.shx
create mode 100644 pysal/examples/test_examples.py
create mode 100644 pysal/examples/us_income/README.md
create mode 100644 pysal/examples/us_income/spi_download.csv
create mode 100644 pysal/examples/us_income/states48.gal
create mode 100644 pysal/examples/us_income/us48.dbf
create mode 100644 pysal/examples/us_income/us48.shp
create mode 100644 pysal/examples/us_income/us48.shx
create mode 100644 pysal/examples/us_income/usjoin.csv
create mode 100644 pysal/examples/virginia/README.md
create mode 100644 pysal/examples/virginia/virginia.dbf
create mode 100644 pysal/examples/virginia/virginia.gal
create mode 100644 pysal/examples/virginia/virginia.json
create mode 100644 pysal/examples/virginia/virginia.prj
create mode 100644 pysal/examples/virginia/virginia.shp
create mode 100644 pysal/examples/virginia/virginia.shx
create mode 100644 pysal/examples/virginia/virginia_queen.dat
create mode 100644 pysal/examples/virginia/virginia_queen.dbf
create mode 100644 pysal/examples/virginia/virginia_queen.gal
create mode 100644 pysal/examples/virginia/virginia_queen.mat
create mode 100644 pysal/examples/virginia/virginia_queen.mtx
create mode 100644 pysal/examples/virginia/virginia_queen.swm
create mode 100644 pysal/examples/virginia/virginia_queen.txt
create mode 100644 pysal/examples/virginia/virginia_queen.wk1
create mode 100644 pysal/examples/virginia/virginia_rook.gal
create mode 100644 pysal/examples/wmat/geobugs_scot
create mode 100755 pysal/examples/wmat/lattice10x10.shp
create mode 100755 pysal/examples/wmat/lattice10x10.shx
create mode 100644 pysal/examples/wmat/ohio.swm
create mode 100644 pysal/examples/wmat/rook31.dbf
create mode 100644 pysal/examples/wmat/rook31.gal
create mode 100644 pysal/examples/wmat/rook31.shp
create mode 100644 pysal/examples/wmat/rook31.shx
create mode 100644 pysal/examples/wmat/spat-sym-us.mat
create mode 100644 pysal/examples/wmat/spat-sym-us.wk1
create mode 100644 pysal/examples/wmat/spdep_listw2WB_columbus
create mode 100644 pysal/examples/wmat/stata_full.txt
create mode 100644 pysal/examples/wmat/stata_sparse.txt
create mode 100644 pysal/examples/wmat/wmat.dat
create mode 100644 pysal/examples/wmat/wmat.mtx
create mode 100644 pysal/spreg/diagnostics_sur.py
create mode 100644 pysal/spreg/opt.py
create mode 100644 pysal/spreg/optional_imports.ipynb
create mode 100644 pysal/spreg/sur.py
create mode 100644 pysal/spreg/sur_error.py
create mode 100644 pysal/spreg/sur_lag.py
create mode 100644 pysal/spreg/sur_utils.py
create mode 100644 pysal/spreg/tests/test_sur.py
create mode 100644 pysal/spreg/tests/test_sur_error.py
create mode 100644 pysal/spreg/tests/test_sur_lag.py
create mode 100644 tools/bump.py
create mode 100755 tools/spregsync
--
Alioth's /usr/local/bin/git-commit-notice on
/srv/git.debian.org/git/pkg-grass/pysal.git
_______________________________________________
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel
