Your message dated Fri, 23 Apr 2010 13:18:53 +0000
with message-id <e1o5imt-0002lg...@ries.debian.org>
and subject line Bug#510057: fixed in hdf5 1.8.4-patch1-2
has caused the Debian Bug report #510057,
regarding Consider creating "default MPI" version
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
510057: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=510057
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: hdf5
Severity: wishlist
As you know, building against MPI is tricky. Lots of folks have
adopted a strategy of building against OpenMPI on architectures it
supports and using LAM for the rest [1]. However, that means the
knowledge of which architectures can build OpenMPI is replicated in
the control files of many packages. I package MINC, which uses MPI
via hdf5. The current hdf5 packaging forces me to replicate this
information in the MINC control file.
Recently, Adam Powell created a meta-package [2] to centralize this
knowledge; c.f. discussion in [3]. The new meta-package produces two
binary meta-packages: mpi-default-dev and mpi-default-bin which depend
on libopenmpi-dev and openmpi-bin respectively on the platforms where
they are available, and lam4-dev and lam-runtime on the others.
Please consider introducing corresponding mpi-using hdf5 packages,
either in addition to libhdf5-lam, libhdf5-mpich, etc or as a
replacement for them.
The goal would be to have libhdf5-mpi-default-dev for packages such as
MINC to build with.
Cheers,
-Steve
[1] http://lists.debian.org/debian-science/2008/10/msg00097.html
[2] http://packages.qa.debian.org/m/mpi-defaults.html
[3] http://lists.debian.org/debian-science/2008/11/msg00051.html
-- System Information:
Debian Release: 5.0
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.26-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.4-patch1-2
We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive:
hdf5-tools_1.8.4-patch1-2_i386.deb
to main/h/hdf5/hdf5-tools_1.8.4-patch1-2_i386.deb
hdf5_1.8.4-patch1-2.diff.gz
to main/h/hdf5/hdf5_1.8.4-patch1-2.diff.gz
hdf5_1.8.4-patch1-2.dsc
to main/h/hdf5/hdf5_1.8.4-patch1-2.dsc
libhdf5-doc_1.8.4-patch1-2_all.deb
to main/h/hdf5/libhdf5-doc_1.8.4-patch1-2_all.deb
libhdf5-lam-1.8.4_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-lam-1.8.4_1.8.4-patch1-2_i386.deb
libhdf5-lam-dev_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-lam-dev_1.8.4-patch1-2_i386.deb
libhdf5-mpi-dev_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-mpi-dev_1.8.4-patch1-2_i386.deb
libhdf5-mpich-1.8.4_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-mpich-1.8.4_1.8.4-patch1-2_i386.deb
libhdf5-mpich-dev_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-mpich-dev_1.8.4-patch1-2_i386.deb
libhdf5-openmpi-1.8.4_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-openmpi-1.8.4_1.8.4-patch1-2_i386.deb
libhdf5-openmpi-dev_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-openmpi-dev_1.8.4-patch1-2_i386.deb
libhdf5-serial-1.8.4_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-serial-1.8.4_1.8.4-patch1-2_i386.deb
libhdf5-serial-dev_1.8.4-patch1-2_i386.deb
to main/h/hdf5/libhdf5-serial-dev_1.8.4-patch1-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 510...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Francesco Paolo Lovergine <fran...@debian.org> (supplier of updated hdf5
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 23 Apr 2010 11:32:55 +0200
Source: hdf5
Binary: libhdf5-serial-1.8.4 libhdf5-serial-dev libhdf5-lam-1.8.4
libhdf5-lam-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libhdf5-mpich-1.8.4
libhdf5-mpich-dev libhdf5-mpi-dev libhdf5-doc hdf5-tools
Architecture: source all i386
Version: 1.8.4-patch1-2
Distribution: unstable
Urgency: low
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Francesco Paolo Lovergine <fran...@debian.org>
Description:
hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
libhdf5-lam-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files - LAM
version
libhdf5-lam-dev - Hierarchical Data Format 5 (HDF5) - development files - LAM
versi
libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH ver
libhdf5-mpich-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files -
MPICH version
libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH ver
libhdf5-openmpi-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files -
OpenMPI versi
libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
OpenMPI v
libhdf5-serial-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files -
serial versio
libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files -
serial ve
Closes: 510057
Changes:
hdf5 (1.8.4-patch1-2) unstable; urgency=low
.
[ Adam C. Powell, IV ]
* Added libhdf5-mpi-dev package which simply depends on default MPI version
of HDF5 for each platform.
(closes: #510057)
.
[ Francesco Paolo Lovergine ]
* Policy bumped to 3.8.4, no changes required.
Checksums-Sha1:
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libhdf5-doc_1.8.4-patch1-2_all.deb
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libhdf5-serial-1.8.4_1.8.4-patch1-2_i386.deb
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libhdf5-serial-dev_1.8.4-patch1-2_i386.deb
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libhdf5-lam-1.8.4_1.8.4-patch1-2_i386.deb
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libhdf5-mpi-dev_1.8.4-patch1-2_i386.deb
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hdf5-tools_1.8.4-patch1-2_i386.deb
Checksums-Sha256:
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hdf5_1.8.4-patch1-2.dsc
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libhdf5-serial-1.8.4_1.8.4-patch1-2_i386.deb
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libhdf5-serial-dev_1.8.4-patch1-2_i386.deb
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libhdf5-lam-1.8.4_1.8.4-patch1-2_i386.deb
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libhdf5-lam-dev_1.8.4-patch1-2_i386.deb
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libhdf5-openmpi-dev_1.8.4-patch1-2_i386.deb
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Files:
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hdf5_1.8.4-patch1-2.diff.gz
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libhdf5-doc_1.8.4-patch1-2_all.deb
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libhdf5-serial-1.8.4_1.8.4-patch1-2_i386.deb
be4be46c48c73c1117c5faf65367d963 2094918 libdevel optional
libhdf5-serial-dev_1.8.4-patch1-2_i386.deb
d55200c908eb7f097e5461019b81b146 966462 libs extra
libhdf5-lam-1.8.4_1.8.4-patch1-2_i386.deb
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libhdf5-lam-dev_1.8.4-patch1-2_i386.deb
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libhdf5-openmpi-1.8.4_1.8.4-patch1-2_i386.deb
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libhdf5-openmpi-dev_1.8.4-patch1-2_i386.deb
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libhdf5-mpich-dev_1.8.4-patch1-2_i386.deb
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libhdf5-mpi-dev_1.8.4-patch1-2_i386.deb
5b5e5faa892ab4c0f76531e58de1a782 449380 science optional
hdf5-tools_1.8.4-patch1-2_i386.deb
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--- End Message ---
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