Thank you Satish! I think I find the issue, the MKLROOT should be one of the subdirectory for the previous address.
Another question, do you know if PETSc can be configured with AMD AOCL https://urldefense.us/v3/__https://www.amd.com/en/developer/aocl.html__;!!G_uCfscf7eWS!dPM5PLRb-ePnG4HHZzs-Z7FUTkod4fvyBeYnsMy2Kg11pRg4gTAZ2D7J7w0Cx5UbezSeYC5tDcB2GqbdDP2VwiDJ-vwREa2E1Ns$ as the BLAS and LAPACK. Thanks, Yongzhong From: Satish Balay <[email protected]> Date: Tuesday, July 23, 2024 at 10:43 PM To: Yongzhong Li <[email protected]> Cc: [email protected] <[email protected]>, [email protected] <[email protected]> Subject: Re: [petsc-users] MKL installation can't be used to configure PETSc [????????? [email protected] ????????? https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification?**K__;Pz8_Pz8_Pz8_Pz8_!!G_uCfscf7eWS!dPM5PLRb-ePnG4HHZzs-Z7FUTkod4fvyBeYnsMy2Kg11pRg4gTAZ2D7J7w0Cx5UbezSeYC5tDcB2GqbdDP2VwiDJ-vwRUsxH6jE$ ]<https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification?**L5d__;Pz8_Pz8_Pz8_Pz8_JQ!!G_uCfscf7eWS!dPM5PLRb-ePnG4HHZzs-Z7FUTkod4fvyBeYnsMy2Kg11pRg4gTAZ2D7J7w0Cx5UbezSeYC5tDcB2GqbdDP2VwiDJ-vwRmphrP9U$ > Are you sure you are providing the correct path? >>>> --with-blaslapack-dir=/tool/pandora64/.package/oneMKL-2021.3/mkl MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib/64 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib/ia64 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib/em64t MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib/intel64 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/64 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/ia64 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/em64t MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/intel64 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib/32 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/lib/ia32 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/32 MKL Path not found.. skipping: /tool/pandora64/.package/oneMKL-2021.3/mkl/ia32 <<< Normally you should see something like the following [wrt the dir you specify to --with-blaslapack-dir] >>> balay@cg:~$ env |grep MKL MKLROOT=/nfs/gce/software/custom/linux-ubuntu22.04-x86_64/spack/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.2.0/intel-oneapi-mkl-2022.0.2-lzrncoj/mkl/2022.0.2 balay@cg:~$ find /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/spack/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.2.0/intel-oneapi-mkl-2022.0.2-lzrncoj/mkl/2022.0.2 -name libmkl_core.so /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/spack/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.2.0/intel-oneapi-mkl-2022.0.2-lzrncoj/mkl/2022.0.2/lib/ia32/libmkl_core.so /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/spack/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.2.0/intel-oneapi-mkl-2022.0.2-lzrncoj/mkl/2022.0.2/lib/intel64/libmkl_core.so Satish On Wed, 24 Jul 2024, Yongzhong Li wrote: > Dear PETSc developers, > > Recently, when I configured the PETSc with blas/lapack provided by Intel MKL, > I got the following error message, > > > [ 1%] Performing configure step for 'external_petsc' > ============================================================================================= > Configuring PETSc to compile on your system > ============================================================================================= > ============================================================================================= > ***** WARNING ***** > Found environment variable: MAKEFLAGS=s. Ignoring it! Use "./configure > MAKEFLAGS=$MAKEFLAGS" if you really want to use this value > ============================================================================================= > TESTING: checkLib from > config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:114) > ********************************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > --------------------------------------------------------------------------------------------- > You set a value for --with-blaslapack-dir=<dir>, but > /tool/pandora64/.package/oneMKL-2021.3/mkl cannot be used > ********************************************************************************************* > > make[2]: *** [CMakeFiles/external_petsc.dir/build.make:92: > external/builds/petsc-3.21.0/src/external_petsc-stamp/external_petsc-configure] > Error 1 > make[1]: *** [CMakeFiles/Makefile2:114: CMakeFiles/external_petsc.dir/all] > Error 2 > make: *** [Makefile:91: all] Error 2 > > However, I think I was using the correct MKL root address to configure PETSc. > I have attached the configure.log file, could you help me look at where might > be wrong? > > Thanks! > Yongzhong > ----------------------------------------------------------- > Yongzhong Li > PhD student | Electromagnetics Group > Department of Electrical & Computer Engineering > University of Toronto > https://urldefense.us/v3/__https://can01.safelinks.protection.outlook.com/?url=https*3A*2F*2Furldefense.us*2Fv3*2F__http*3A*2F*2Fwww.modelics.org__*3B!!G_uCfscf7eWS!aa4LdUX0JV3i0ce3Jp20GLg521rd7L25vZSpFhCmlvTUN8EZFjfbk-IsfiTOD3IpCfXCB_zHA8nh1WMIkiHosbwZgv8PzmzPEec*24&data=05*7C02*7Cyongzhong.li*40mail.utoronto.ca*7Cac6df78a38534d3cced208dcab8a6ce0*7C78aac2262f034b4d9037b46d56c55210*7C0*7C0*7C638573858217585114*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C0*7C*7C*7C&sdata=c237HxX0WzOtO2poHtci4lSZaaG37UH81irVGlu*2FsUg*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUl!!G_uCfscf7eWS!dPM5PLRb-ePnG4HHZzs-Z7FUTkod4fvyBeYnsMy2Kg11pRg4gTAZ2D7J7w0Cx5UbezSeYC5tDcB2GqbdDP2VwiDJ-vwR0oLyWl4$ > > <https://urldefense.us/v3/__http://www.modelics.org__;!!G_uCfscf7eWS!aa4LdUX0JV3i0ce3Jp20GLg521rd7L25vZSpFhCmlvTUN8EZFjfbk-IsfiTOD3IpCfXCB_zHA8nh1WMIkiHosbwZgv8PzmzPEec$> > >
