Well - you sent in libmesh log not petsc's configure.log/make.log for petsc-3.17
Anyway - with petsc-3.13 - you have: >>>> Matlab: Includes: -I/usr/local/MATLAB/R2020b/extern/include /usr/local/MATLAB/R2020b MatlabEngine: Library: -Wl,-rpath,/usr/local/MATLAB/R2020b/sys/os/glnxa64:/usr/local/MATLAB/R2020b/bin/glnxa64:/usr/local/MATLAB/R2020b/extern/lib/glnxa64 -L/usr/local/MATLAB/R2020b/bin/glnxa64 -L/usr/local/MATLAB/R2020b/extern/lib/glnxa64 -leng -lmex -lmx -lmat -lut -licudata -licui18n -licuuc Language used to compile PETSc: C <<<<< With petsc-3.19 (and matlab-R2022a) - we are seeing: https://gitlab.com/petsc/petsc/-/jobs/4904566768 >>> Matlab: Includes: -I/nfs/gce/software/custom/linux-ubuntu22.04-x86_64/matlab/R2022a/extern/include Libraries: -Wl,-rpath,/nfs/gce/software/custom/linux-ubuntu22.04-x86_64/matlab/R2022a/bin/glnxa64 -L/nfs/gce/software/custom/linux-ubuntu22.04-x86_64/matlab/R2022a/bin/glnxa64 -leng -lmex -lmx -lmat Executable: /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/matlab/R2022a mex: /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/matlab/R2022a/bin/mex matlab: /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/matlab/R2022a/bin/matlab -glnxa64 <<< I.e "-lut -licudata -licui18n -licuuc" are not preset here. This might be a change wrt newer matlab versions. You can: - edit /home/vit/sfw/petsc/3.13.4/linux-opt/lib/petsc/conf/petscvariables and remove all occurrences of "-lut -licudata -licui18n -licuuc" - now run 'make all' in '/home/vit/sfw/petsc/3.13.4' And see if the build works now. Satish On Tue, 29 Aug 2023, INTURU SRINIVAS 20PHD0548 via petsc-users wrote: > I am sharing the log files while building petsc3.13.4 with matlab and also > the log file while building libmesh with petsc3.17.5 and matlab. Building > petsc 3.17.5 with matlab was done successfully. But libmesh is not able to > find the petsc > Please find the attachments. > > On Tue, Aug 29, 2023 at 7:31 PM Satish Balay <[email protected]> wrote: > > > Send configure.log, make.log from both petsc-3.13 and 3.17 [or 3.19]. > > > > [you can gzip them to make the logs friendly to mailing list - or send > > them to petsc-maint] > > > > And does test suite work with 3.17? [or 3.19?] > > > > Satish > > > > On Tue, 29 Aug 2023, INTURU SRINIVAS 20PHD0548 via petsc-users wrote: > > > > > I am sharing the make.log file while building petsc-3.13.4 with Matlab. > > > Please find the attachment and do the needful. > > > > > > On Tue, Aug 29, 2023 at 10:19 AM INTURU SRINIVAS 20PHD0548 < > > > [email protected]> wrote: > > > > > > > I tried with petsc-3.17.5. During building of libmesh, the error shows > > > > petsc was not found > > > > > > > > On Mon, Aug 28, 2023 at 9:43 PM Satish Balay <[email protected]> > > wrote: > > > > > > > >> https://ibamr.github.io/linux says petsc-3.17 > > > >> > > > >> Here you are using 3.13 > > > >> > > > >> Can you retry with petsc-3.17.5? > > > >> > > > >> Satish > > > >> > > > >> On Mon, 28 Aug 2023, INTURU SRINIVAS 20PHD0548 via petsc-users wrote: > > > >> > > > >> > Hello, > > > >> > > > > >> > I want to build PETSc with MATLAB for working on the simulation > > using > > > >> IBAMR > > > >> > open software. While building the PETSc, using the following > > > >> > > > > >> > export PETSC_DIR=$PWD > > > >> > export PETSC_ARCH=linux-debug > > > >> > ./configure \ > > > >> > --CC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicc \ > > > >> > --CXX=$HOME/sfw/linux/openmpi/4.1.4/bin/mpicxx \ > > > >> > --FC=$HOME/sfw/linux/openmpi/4.1.4/bin/mpif90 \ > > > >> > --with-debugging=1 \ > > > >> > --download-hypre=1 \ > > > >> > --download-fblaslapack=1 \ > > > >> > --with-x=0 \ > > > >> > --with-matlab-dir=/usr/local/MATLAB/R2020b/ > > > >> > --with-matlab-engine=1 > > > >> > --with-matlab-engine-dir=/usr/local/MATLAB/R2020b/extern/engines/ > > > >> > > > > >> > make -j4 > > > >> > make -j4 test > > > >> > > > > >> > I got the following error > > > >> > CLINKER > > > >> linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test > > > >> > /usr/bin/ld: > > > >> > > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in > > > >> > function `EvaluateResidual': > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:32: > > > >> > undefined reference to `PetscMatlabEnginePut' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:33: > > > >> > undefined reference to `PetscMatlabEngineEvaluate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:35: > > > >> > undefined reference to `PetscMatlabEngineGet' > > > >> > /usr/bin/ld: > > > >> > > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in > > > >> > function `EvaluateJacobian': > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:46: > > > >> > undefined reference to `PetscMatlabEnginePut' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:47: > > > >> > undefined reference to `PetscMatlabEngineEvaluate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:49: > > > >> > undefined reference to `PetscMatlabEngineGet' > > > >> > /usr/bin/ld: > > > >> > > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in > > > >> > function `TaoPounders': > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:75: > > > >> > undefined reference to `PetscMatlabEngineGet' > > > >> > /usr/bin/ld: > > > >> > > > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test.o: in > > > >> > function `main': > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:126: > > > >> > undefined reference to `PetscMatlabEngineCreate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:127: > > > >> > undefined reference to `PetscMatlabEngineEvaluate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:139: > > > >> > undefined reference to `PetscMatlabEngineEvaluate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:140: > > > >> > undefined reference to `PetscMatlabEngineGetArray' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:142: > > > >> > undefined reference to `PetscMatlabEngineGetArray' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:144: > > > >> > undefined reference to `PetscMatlabEngineGetArray' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:146: > > > >> > undefined reference to `PetscMatlabEngineGetArray' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:148: > > > >> > undefined reference to `PetscMatlabEngineGetArray' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:154: > > > >> > undefined reference to `PetscMatlabEngineEvaluate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:157: > > > >> > undefined reference to `PetscMatlabEngineEvaluate' > > > >> > /usr/bin/ld: > > > >> > > > > >> > > /home/vit/sfw/petsc/3.13.4/src/tao/leastsquares/tutorials/matlab/matlab_ls_test.c:158: > > > >> > undefined reference to `PetscMatlabEngineDestroy' > > > >> > > > > >> > collect2: error: ld returned 1 exit status > > > >> > make: *** [gmakefile.test:185: > > > >> > linux-debug/tests/tao/leastsquares/tutorials/matlab/matlab_ls_test] > > > >> Error 1 > > > >> > make: *** Waiting for unfinished jobs.... > > > >> > > > > >> > Please help me to solve this issue > > > >> > > > > >> > Thank you > > > >> > Srinivas > > > >> > > > > >> > > > > >> > > > >> > > > > > > > > > >
