Send the output from
otool -L libdeal_II.g.9.3.0.dylib
otool -L libslepc.3.15.dylib
otool -L libpetsc.3.15.dylib
You will need to find the directories of these libraries and include them
in the otool command.
> On Oct 25, 2021, at 10:00 AM, Ahmed Galal <[email protected]> wrote:
>
> Hello,
>
> I tried to run Step-17 in Dealii, a PETSc Dependenant software, but I got the
> following error. Given I have two versions of PETSc. I use the other one for
> another software.
>
> I googled and found that the issue is solved by commenting out the line
> "ADD_FLAGS(DEAL_II_LINKER_FLAGS "-fuse-ld=gold")" in
> "cmake/checks/check_01_compiler_features.cmake", make test, worked.
> ---
> https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1
>
> <https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1>
> ---
>
> Any suggestions for how to get around that error "PETSc Error --- Application
> was linked against both OpenMPI and MPICH based MPI libraries and will not
> run correctly" in the new version of DealII.9.3 as I could not find a .cmake
> similar file to edit?
>
> Thanks in advance!
> Ahmed
>
> Error:
> ------------------------
>
> PETSc Error --- Application was linked against both OpenMPI and MPICH based
> MPI libraries and will not run correctly
>
> [----] *** Process received signal ***
>
> [----] Signal: Segmentation fault: 11 (11)
>
> [----] Signal code: Address not mapped (1)
>
> [----] Failing at address: 0x68
>
> [----] [ 0] 0 libsystem_platform.dylib 0x00007fff2041cd7d
> _sigtramp + 29
>
> [----] [ 1] 0 ??? 0x0000000060b9d791 0x0 +
> 1622792081
>
> [----] [ 2] 0 libsystem_c.dylib 0x00007fff202edfcc
> vfprintf_l + 28
>
> [----] [ 3] 0 libsystem_c.dylib 0x00007fff202e69a2
> fprintf + 160
>
> [----] [ 4] 0 libpetsc.3.15.dylib 0x000000014c224f0d
> PetscVFPrintfDefault + 685
>
> [ 5] 0 libpetsc.3.15.dylib 0x000000014c2280d6 PetscFPrintf
> + 726
>
> [ 6] 0 libpetsc.3.15.dylib 0x000000014c21d537
> PetscErrorPrintfDefault + 375
>
> [ 7] 0 libpetsc.3.15.dylib 0x000000014c21d66a
> PetscTraceBackErrorHandler + 154
>
> [ 8] 0 libpetsc.3.15.dylib 0x000000014c21713c PetscError +
> 716
>
> [ 9] 0 libslepc.3.15.dylib 0x000000014bc9cc8c
> SlepcInitialize + 428
>
> [10] 0 libdeal_II.g.9.3.0.dylib 0x00000001151ae627
> _ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj + 135
>
> [11] 0 libdeal_II.g.9.3.0.dylib 0x00000001151aece9
> _ZN6dealii9Utilities3MPI16MPI_InitFinalizeC1ERiRPPcj + 9
>
> [12] 0 step-17 0x000000010f244892 main + 82
>
> [13] 0 libdyld.dylib 0x00007fff203f2f3d start + 1
>
> [14] 0 ??? 0x0000000000000001 0x0 + 1
>
> *** End of error message ***
>
> make[3]: *** [CMakeFiles/run] Segmentation fault: 11
>
> make[2]: *** [CMakeFiles/run.dir/all] Error 2
>
> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
>
> make: *** [run] Error 2
>
> bash-3.2$
>
