Still missing something: [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: Unhandled case, must have at least two fields, not 1 [0]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.14.2-353-gc57b1f101b GIT Date: 2020-12-27 11:51:24 -0600 [0]PETSC ERROR: ./ex2 on a arch-macosx-gnu-g named MarksMac-302.local by markadams Thu Dec 31 12:44:36 2020 [0]PETSC ERROR: Configure options --with-mpi-dir=/usr/local/Cellar/mpich/3.3.2_1 COPTFLAGS="-g -O0" CXXOPTFLAGS="-g -O0" --download-metis=1 --download-parmetis=1 --download-kokkos=1 --download-kokkos-kernels=1 --download-p4est=1 --with-zlib=1 --with-make-np=4 --download-hdf5=1 -with-cuda=0 --with-x=0 --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-g --with-64-bit-indices=0 --with-openmp=0 --with-ctable=0 [0]PETSC ERROR: #1 PCFieldSplitSetDefaults() line 571 in /Users/markadams/Codes/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c [0]PETSC ERROR: #2 PCSetUp_FieldSplit() line 614 in /Users/markadams/Codes/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c [0]PETSC ERROR: #3 PCSetUp() line 1015 in /Users/markadams/Codes/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: #4 KSPSetUp() line 406 in /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: #5 PCSetUpOnBlocks_ASM() line 437 in /Users/markadams/Codes/petsc/src/ksp/pc/impls/asm/asm.c [0]PETSC ERROR: #6 PCSetUpOnBlocks() line 1046 in /Users/markadams/Codes/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: #7 KSPSetUpOnBlocks() line 214 in /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: #8 KSPSolve_Private() line 727 in /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: #9 KSPSolve() line 963 in /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: #10 SNESSolve_NEWTONLS() line 225 in /Users/markadams/Codes/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: #11 SNESSolve() line 4563 in /Users/markadams/Codes/petsc/src/snes/interface/snes.c [0]PETSC ERROR: #12 TSStep_ARKIMEX() line 845 in /Users/markadams/Codes/petsc/src/ts/impls/arkimex/arkimex.c [0]PETSC ERROR: #13 TSStep() line 3771 in /Users/markadams/Codes/petsc/src/ts/interface/ts.c [0]PETSC ERROR: #14 TSSolve() line 4168 in /Users/markadams/Codes/petsc/src/ts/interface/ts.c [0]PETSC ERROR: #15 main() line 774 in ex2.c [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -dm_landau_amr_levels_max 8 [0]PETSC ERROR: -dm_landau_amr_post_refine 0 [0]PETSC ERROR: -dm_landau_device_type cpu [0]PETSC ERROR: -dm_landau_domain_radius 5 [0]PETSC ERROR: -dm_landau_Ez 0 [0]PETSC ERROR: -dm_landau_ion_charges 1 [0]PETSC ERROR: -dm_landau_ion_masses 1 [0]PETSC ERROR: -dm_landau_n 1,1 [0]PETSC ERROR: -dm_landau_thermal_temps 4,4 [0]PETSC ERROR: -dm_landau_type p4est [0]PETSC ERROR: -dm_preallocate_only [0]PETSC ERROR: -ex2_connor_e_field_units [0]PETSC ERROR: -ex2_impurity_source_type pulse [0]PETSC ERROR: -ex2_plot_dt 1 [0]PETSC ERROR: -ex2_pulse_rate 2e+0 [0]PETSC ERROR: -ex2_pulse_start_time 32 [0]PETSC ERROR: -ex2_pulse_width_time 15 [0]PETSC ERROR: -ex2_t_cold 1 [0]PETSC ERROR: -ex2_test_type spitzer [0]PETSC ERROR: -info :dm [0]PETSC ERROR: -ksp_monitor [0]PETSC ERROR: -ksp_type preonly [0]PETSC ERROR: -pc_type asm [0]PETSC ERROR: -petscspace_degree 3 [0]PETSC ERROR: -snes_converged_reason [0]PETSC ERROR: -snes_max_it 15 [0]PETSC ERROR: -snes_monitor [0]PETSC ERROR: -snes_rtol 1.e-14 [0]PETSC ERROR: -snes_stol 1.e-14
*[0]PETSC ERROR: -sub_fieldsplit_0_fields 0[0]PETSC ERROR: -sub_fieldsplit_0_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_1_fields 1[0]PETSC ERROR: -sub_fieldsplit_1_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_2_fields 2[0]PETSC ERROR: -sub_fieldsplit_2_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_3_fields 3[0]PETSC ERROR: -sub_fieldsplit_3_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_4_fields 4[0]PETSC ERROR: -sub_fieldsplit_4_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_5_fields 5[0]PETSC ERROR: -sub_fieldsplit_5_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_6_fields 6[0]PETSC ERROR: -sub_fieldsplit_6_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_7_fields 7[0]PETSC ERROR: -sub_fieldsplit_7_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_8_fields 8[0]PETSC ERROR: -sub_fieldsplit_8_pc_type lu[0]PETSC ERROR: -sub_fieldsplit_9_fields 9[0]PETSC ERROR: -sub_fieldsplit_9_pc_type lu[0]PETSC ERROR: -sub_pc_fieldsplit_type additive[0]PETSC ERROR: -sub_pc_type fieldsplit* [0]PETSC ERROR: -ts_adapt_clip .25,1.1 [0]PETSC ERROR: -ts_adapt_dt_max 1. [0]PETSC ERROR: -ts_adapt_dt_min 1e-4 [0]PETSC ERROR: -ts_adapt_monitor [0]PETSC ERROR: -ts_adapt_scale_solve_failed 0.75 [0]PETSC ERROR: -ts_adapt_time_step_increase_delay 5 [0]PETSC ERROR: -ts_arkimex_type 1bee [0]PETSC ERROR: -ts_dt .1e-1 [0]PETSC ERROR: -ts_exact_final_time stepover [0]PETSC ERROR: -ts_max_snes_failures -1 [0]PETSC ERROR: -ts_max_steps 1 [0]PETSC ERROR: -ts_max_time 100 [0]PETSC ERROR: -ts_monitor [0]PETSC ERROR: -ts_rtol 1e-3 [0]PETSC ERROR: -ts_type arkimex [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to [email protected] application called MPI_Abort(MPI_COMM_SELF, 774077) - process 0 On Thu, Dec 31, 2020 at 11:03 AM Matthew Knepley <[email protected]> wrote: > On Thu, Dec 31, 2020 at 8:42 AM Mark Adams <[email protected]> wrote: > >> Humm, I have two fields (Nf) here: >> > > I never check the default mode of splitting all fields apart. That might > be broken. You can always use explicit specification > > -sub_fieldsplit_0_fields 0 -sub_fieldsplit_1_fields 1 > > > Thanks, > > Matt > > >> /usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec -n 1 ./ex2 -ex2_test_type >> spitzer -ex2_connor_e_field_units -dm_landau_Ez 0 -petscspace_degree 3 >> -dm_landau_type p4est -dm_landau_ion_masses 1 -dm_landau_ion_charges 1 >> -dm_landau_thermal_temps 4,4 -dm_landau_n 1,1 -ts_monitor -ts_adapt_monitor >> -snes_rtol 1.e-14 -snes_stol 1.e-14 -snes_monitor -snes_converged_reason >> -snes_max_it 15 -ts_type arkimex -ts_exact_final_time stepover >> -ts_arkimex_type 1bee -ts_max_snes_failures -1 -ts_rtol 1e-3 -ts_dt .1e-1 >> -ts_adapt_clip .25,1.1 -ts_max_time 100 -ts_max_steps 1 >> -ts_adapt_scale_solve_failed 0.75 -ts_adapt_time_step_increase_delay 5 >> -pc_type lu -ksp_type preonly -dm_landau_amr_levels_max 8 >> -dm_landau_amr_post_refine 0 -dm_landau_domain_radius 5 -ex2_plot_dt 1 >> -info :dm -ts_adapt_dt_min 1e-4 -ts_adapt_dt_max 1. -dm_preallocate_only >> -ex2_impurity_source_type pulse -ex2_pulse_start_time 32 >> -ex2_pulse_width_time 15 -ex2_pulse_rate 2e+0 -ex2_t_cold 1 >> -dm_landau_device_type cpu -pc_type asm -sub_pc_type fieldsplit >> -sub_pc_fieldsplit_type additive -sub_fieldsplit_0_pc_type lu -ksp_monitor >> [0] ProcessOptions(): num_species set to number of thermal temps provided >> (2) >> masses: e= 9.109e-31; ions in proton mass units: 1.000e+00 >> 0.000e+00 ... >> charges: e=-1.602e-19; charges in elementary units: 1.000e+00 >> 0.000e+00 >> thermal T (K): e= 4.642e+07 i= 4.642e+07 imp= 0.000e+00. v_0= 2.652e+07 >> n_0= 1.000e+20 t_0= 4.630e-05 domain= 5.000e+00 >> [0] ProcessREOptions(): Num electrons from ions=1., T_cold= 1.160e+07, >> ion potential= 1.500e+01, E_z= 0.000e+00 v_0= 2.652e+07 >> CalculateE j0=0. Ec = 0.0509908 >> [0] DMGetDMSNES(): Creating new DMSNES >> [0] DMGetDMTS(): Creating new DMTS >> [0] DMGetDMSNESWrite(): Copying DMSNES due to write >> 0 TS dt 0.01 time 0. >> >> *0) species-0: charge density= -1.6022862392985e+01 z-momentum= >> -1.4067414979736e-19 energy= 9.6063873494138e+04 0) species-1: charge >> density= 1.6029890912678e+01 z-momentum= -8.1631830255319e-18 energy= >> 9.6333618295472e+04* >> 0) Total: charge density= 7.0285196929767e-03, momentum= >> -8.3038571753292e-18, energy= 1.9239749178961e+05 (m_i[0]/m_e = 1835.47, >> 50 cells) >> testSpitzer 0) time= 0.000e+00 n_e= 1.000e+00 E= 0.000e+00 J= >> -1.495e-07 J_re= -0.000e+00 0 % Te_kev= 3.995e+00 Z_eff=1. E/J to eta >> ratio=-0. (diff=1e+10) constant E >> [0] DMGetDMKSP(): Creating new DMKSP >> [0]FormLandau: 800 IPs, 50 cells, totDim=32, Nb=16, Nq=16, >> elemMatSize=1024, dim=2, Tab: Nb=16 *Nf=2 *Np=16 cdim=2 N=896 N+hang=1176 >> 0 SNES Function norm 4.974988592014e-03 >> [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [0]PETSC ERROR: Petsc has generated inconsistent data >> >> *[0]PETSC ERROR: Unhandled case, must have at least two fields, not >> 1*[0]PETSC >> ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for >> trouble shooting. >> [0]PETSC ERROR: Petsc Development GIT revision: v3.14.2-353-gc57b1f101b >> GIT Date: 2020-12-27 11:51:24 -0600 >> [0]PETSC ERROR: ./ex2 on a arch-macosx-gnu-g named MarksMac-302.local by >> markadams Thu Dec 31 08:35:49 2020 >> [0]PETSC ERROR: Configure options >> --with-mpi-dir=/usr/local/Cellar/mpich/3.3.2_1 COPTFLAGS="-g -O0" >> CXXOPTFLAGS="-g -O0" --download-metis=1 --download-parmetis=1 >> --download-kokkos=1 --download-kokkos-kernels=1 --download-p4est=1 >> --with-zlib=1 --with-make-np=4 --download-hdf5=1 -with-cuda=0 --with-x=0 >> --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-g --with-64-bit-indices=0 >> --with-openmp=0 --with-ctable=0 >> [0]PETSC ERROR: #1 PCFieldSplitSetDefaults() line 571 in >> /Users/markadams/Codes/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c >> [0]PETSC ERROR: #2 PCSetUp_FieldSplit() line 614 in >> /Users/markadams/Codes/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c >> [0]PETSC ERROR: #3 PCSetUp() line 1015 in >> /Users/markadams/Codes/petsc/src/ksp/pc/interface/precon.c >> [0]PETSC ERROR: #4 KSPSetUp() line 406 in >> /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c >> [0]PETSC ERROR: #5 PCSetUpOnBlocks_ASM() line 437 in >> /Users/markadams/Codes/petsc/src/ksp/pc/impls/asm/asm.c >> [0]PETSC ERROR: #6 PCSetUpOnBlocks() line 1046 in >> /Users/markadams/Codes/petsc/src/ksp/pc/interface/precon.c >> [0]PETSC ERROR: #7 KSPSetUpOnBlocks() line 214 in >> /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c >> [0]PETSC ERROR: #8 KSPSolve_Private() line 727 in >> /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c >> [0]PETSC ERROR: #9 KSPSolve() line 963 in >> /Users/markadams/Codes/petsc/src/ksp/ksp/interface/itfunc.c >> [0]PETSC ERROR: #10 SNESSolve_NEWTONLS() line 225 in >> /Users/markadams/Codes/petsc/src/snes/impls/ls/ls.c >> [0]PETSC ERROR: #11 SNESSolve() line 4563 in >> /Users/markadams/Codes/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: #12 TSStep_ARKIMEX() line 845 in >> /Users/markadams/Codes/petsc/src/ts/impls/arkimex/arkimex.c >> [0]PETSC ERROR: #13 TSStep() line 3771 in >> /Users/markadams/Codes/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: #14 TSSolve() line 4168 in >> /Users/markadams/Codes/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: #15 main() line 774 in ex2.c >> [0]PETSC ERROR: PETSc Option Table entries: >> [0]PETSC ERROR: -dm_landau_amr_levels_max 8 >> [0]PETSC ERROR: -dm_landau_amr_post_refine 0 >> [0]PETSC ERROR: -dm_landau_device_type cpu >> [0]PETSC ERROR: -dm_landau_domain_radius 5 >> [0]PETSC ERROR: -dm_landau_Ez 0 >> [0]PETSC ERROR: -dm_landau_ion_charges 1 >> [0]PETSC ERROR: -dm_landau_ion_masses 1 >> [0]PETSC ERROR: -dm_landau_n 1,1 >> [0]PETSC ERROR: -dm_landau_thermal_temps 4,4 >> [0]PETSC ERROR: -dm_landau_type p4est >> [0]PETSC ERROR: -dm_preallocate_only >> [0]PETSC ERROR: -ex2_connor_e_field_units >> [0]PETSC ERROR: -ex2_impurity_source_type pulse >> [0]PETSC ERROR: -ex2_plot_dt 1 >> [0]PETSC ERROR: -ex2_pulse_rate 2e+0 >> [0]PETSC ERROR: -ex2_pulse_start_time 32 >> [0]PETSC ERROR: -ex2_pulse_width_time 15 >> [0]PETSC ERROR: -ex2_t_cold 1 >> [0]PETSC ERROR: -ex2_test_type spitzer >> [0]PETSC ERROR: -info :dm >> [0]PETSC ERROR: -ksp_monitor >> [0]PETSC ERROR: -ksp_type preonly >> [0]PETSC ERROR: -pc_type asm >> [0]PETSC ERROR: -petscspace_degree 3 >> [0]PETSC ERROR: -snes_converged_reason >> [0]PETSC ERROR: -snes_max_it 15 >> [0]PETSC ERROR: -snes_monitor >> [0]PETSC ERROR: -snes_rtol 1.e-14 >> [0]PETSC ERROR: -snes_stol 1.e-14 >> [0]PETSC ERROR: -sub_fieldsplit_0_pc_type lu >> [0]PETSC ERROR: -sub_pc_fieldsplit_type additive >> [0]PETSC ERROR: -sub_pc_type fieldsplit >> [0]PETSC ERROR: -ts_adapt_clip .25,1.1 >> [0]PETSC ERROR: -ts_adapt_dt_max 1. >> [0]PETSC ERROR: -ts_adapt_dt_min 1e-4 >> [0]PETSC ERROR: -ts_adapt_monitor >> [0]PETSC ERROR: -ts_adapt_scale_solve_failed 0.75 >> [0]PETSC ERROR: -ts_adapt_time_step_increase_delay 5 >> [0]PETSC ERROR: -ts_arkimex_type 1bee >> [0]PETSC ERROR: -ts_dt .1e-1 >> [0]PETSC ERROR: -ts_exact_final_time stepover >> [0]PETSC ERROR: -ts_max_snes_failures -1 >> [0]PETSC ERROR: -ts_max_steps 1 >> [0]PETSC ERROR: -ts_max_time 100 >> [0]PETSC ERROR: -ts_monitor >> [0]PETSC ERROR: -ts_rtol 1e-3 >> [0]PETSC ERROR: -ts_type arkimex >> [0]PETSC >> >> On Thu, Dec 31, 2020 at 12:30 AM Jed Brown <[email protected]> wrote: >> >>> Mark Adams <[email protected]> writes: >>> >>> > I think the first thing that I need to do is get ASM working on the >>> CPU in >>> > my code as a direct solver. >>> > >>> > FieldSplit was mentioned the way to do this. How would I do that? >>> >>> -pc_type asm -sub_pc_type fieldsplit -sub_pc_fieldsplit_type additive >>> -sub_fieldsplit_0_pc_type lu >>> >> > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ > <http://www.cse.buffalo.edu/~knepley/> >
