For one - the makefiles are primarily used for docs - and the related issue 
with includes is the binding from MANSEC and SUBMANSEC to the corresponding 
sourcefiles.

If the makefiles are removed - and alternate mechanism is need for this [and 
all other doc targets that use makefiles]. I don't know what this replacement 
system is - and if that system will be better or more complex then the current 
system.

And wrt moving include files [I'm not sure if this alternate doc system really 
requires this move of include files, but maybe it helps in separating the 
modules better?] - we shouldn't use PETSC_DIR/include anymore

They should go into PETSC_DIR/PETSC_ARCH/include (at configure step) - and be 
in sync with --prefix organization.

Satish

On Sun, 20 Sep 2020, Barry Smith wrote:

> 
>   The include directory is special because it contains source code from all 
> components of PETSc but artificially collected together in a single directory 
> tree because the C/C++/Fortran compilers like it this way to not require 
> hundreds of -I and for distribution without the source.
> 
>   Should the PETSc git repository be reorganized where the include files in 
> the include directory tree are actually in the appropriate subdirectories of 
> src/ and symbolic links are used in the include directory tree to point to 
> their locations in  src/ ?
> 
>   In the tarball the include files would be actually in the include directory 
> when the tarball is generated.
> 
>   --with-prefix installs will, of course, copy the include files over so 
> having them in src does not matter.
> 
>   Does git handle symbolic links nice enough to support this.
> 
>   The reason to make the change is as we move away from having makefiles in 
> all the directories with lists of files we need to know the "home component" 
> of all the files in the include tree and the natural way to know the home is 
> to have the true files in the appropriate src subdirectory.
> 
>   Barry
> 
> 
> 

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