I get this error running the tests using GPUs. An error in an LAPACK routine.
16:50 master= /lustre/atlas/proj-shared/geo127/petsc$ make PETSC_DIR=/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda PETSC_ARCH="" test Running test examples to verify correct installation Using PETSC_DIR=/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda and PETSC_ARCH= *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /lustre/atlas/proj-shared/geo127/petsc/src/snes/examples/tutorials ex19 ********************************************************************************* cc -o ex19.o -c -O -I/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include `pwd`/ex19.c cc -O -o ex19 ex19.o -L/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/lib -Wl,-rpath,/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/lib -L/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/lib -lpetsc -lHYPRE -lparmetis -lmetis -ldl /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/lib/libpetsc.a(dlimpl.o): In function `PetscDLOpen': dlimpl.c:(.text+0x3b): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/lib/libpetsc.a(send.o): In function `PetscOpenSocket': send.c:(.text+0x3be): warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking true ex19 rm ex19.o Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html lid velocity = 0.0016, prandtl # = 1., grashof # = 1. Number of SNES iterations = 2 Application 19079964 resources: utime ~1s, stime ~1s, Rss ~29412, inblocks ~37563, outblocks ~131654 Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes See http://www.mcs.anl.gov/petsc/documentation/faq.html lid velocity = 0.0016, prandtl # = 1., grashof # = 1. [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: [0]PETSC ERROR: Error in external library Error in external library [1]PETSC ERROR: [0]PETSC ERROR: Error in LAPACK routine 0 Error in LAPACK routine 0 [1]PETSC ERROR: [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: [0]PETSC ERROR: Petsc Development GIT revision: v3.10.2-461-g0ed19bb123 GIT Date: 2018-10-29 13:43:53 +0100 Petsc Development GIT revision: v3.10.2-461-g0ed19bb123 GIT Date: 2018-10-29 13:43:53 +0100 [1]PETSC ERROR: [0]PETSC ERROR: ./ex19 on a named nid16438 by adams Mon Oct 29 16:52:05 2018 ./ex19 on a named nid16438 by adams Mon Oct 29 16:52:05 2018 [1]PETSC ERROR: [0]PETSC ERROR: Configure options --with-cudac=1 --with-batch=0 --prefix=/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda --download-hypre --download-metis --download-parmetis --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC --with-cxxlib-autodetect=0 --with-fc=ftn --with-fortranlib-autodetect=0 --with-shared-libraries=0 --known-mpi-shared-libraries=1 --with-mpiexec=aprun --with-x=0 --with-64-bit-indices --with-debugging=0 PETSC_ARCH=arch-titan-opt64idx-gnu-cuda PETSC_DIR=/lustre/atlas/proj-shared/geo127/petsc Configure options --with-cudac=1 --with-batch=0 --prefix=/lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda --download-hypre --download-metis --download-parmetis --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC --with-cxxlib-autodetect=0 --with-fc=ftn --with-fortranlib-autodetect=0 --with-shared-libraries=0 --known-mpi-shared-libraries=1 --with-mpiexec=aprun --with-x=0 --with-64-bit-indices --with-debugging=0 PETSC_ARCH=arch-titan-opt64idx-gnu-cuda PETSC_DIR=/lustre/atlas/proj-shared/geo127/petsc [1]PETSC ERROR: [0]PETSC ERROR: #1 KSPComputeEigenvalues_GMRES() line 144 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/gmres/gmreig.c #1 KSPComputeEigenvalues_GMRES() line 144 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/gmres/gmreig.c [1]PETSC ERROR: [0]PETSC ERROR: #2 KSPComputeEigenvalues() line 132 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/interface/itfunc.c #2 KSPComputeEigenvalues() line 132 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/interface/itfunc.c [1]PETSC ERROR: [0]PETSC ERROR: #3 KSPChebyshevComputeExtremeEigenvalues_Private() line 288 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/cheby/cheby.c #3 KSPChebyshevComputeExtremeEigenvalues_Private() line 288 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/cheby/cheby.c [1]PETSC ERROR: [0]PETSC ERROR: #4 KSPSolve_Chebyshev() line 390 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/cheby/cheby.c #4 KSPSolve_Chebyshev() line 390 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/cheby/cheby.c [1]PETSC ERROR: [0]PETSC ERROR: #5 KSPSolve() line 780 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/interface/itfunc.c #5 KSPSolve() line 780 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/interface/itfunc.c [1]PETSC ERROR: [0]PETSC ERROR: #6 PCMGMCycle_Private() line 20 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/pc/impls/mg/mg.c #6 PCMGMCycle_Private() line 20 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/pc/impls/mg/mg.c [1]PETSC ERROR: [0]PETSC ERROR: #7 PCApply_MG() line 377 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/pc/impls/mg/mg.c #7 PCApply_MG() line 377 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/pc/impls/mg/mg.c [1]PETSC ERROR: [0]PETSC ERROR: #8 PCApply() line 462 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/pc/interface/precon.c #8 PCApply() line 462 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/pc/interface/precon.c [1]PETSC ERROR: [0]PETSC ERROR: #9 KSP_PCApply() line 281 in /lustre/atlas/proj-shared/geo127/petsc/include/petsc/private/kspimpl.h #9 KSP_PCApply() line 281 in /lustre/atlas/proj-shared/geo127/petsc/include/petsc/private/kspimpl.h [1]PETSC ERROR: [0]PETSC ERROR: #10 KSPFGMRESCycle() line 166 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c #10 KSPFGMRESCycle() line 166 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c [1]PETSC ERROR: [0]PETSC ERROR: #11 KSPSolve_FGMRES() line 291 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c #11 KSPSolve_FGMRES() line 291 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c [1]PETSC ERROR: [0]PETSC ERROR: #12 KSPSolve() line 780 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/interface/itfunc.c #12 KSPSolve() line 780 in /lustre/atlas1/geo127/proj-shared/petsc/src/ksp/ksp/interface/itfunc.c [1]PETSC ERROR: [0]PETSC ERROR: #13 SNESSolve_NEWTONLS() line 224 in /lustre/atlas1/geo127/proj-shared/petsc/src/snes/impls/ls/ls.c #13 SNESSolve_NEWTONLS() line 224 in /lustre/atlas1/geo127/proj-shared/petsc/src/snes/impls/ls/ls.c [1]PETSC ERROR: [0]PETSC ERROR: #14 SNESSolve() line 4396 in /lustre/atlas1/geo127/proj-shared/petsc/src/snes/interface/snes.c #14 SNESSolve() line 4396 in /lustre/atlas1/geo127/proj-shared/petsc/src/snes/interface/snes.c [1]PETSC ERROR: [0]PETSC ERROR: #15 main() line 161 in /lustre/atlas/proj-shared/geo127/petsc/src/snes/examples/tutorials/ex19.c #15 main() line 161 in /lustre/atlas/proj-shared/geo127/petsc/src/snes/examples/tutorials/ex19.c [1]PETSC ERROR: [0]PETSC ERROR: PETSc Option Table entries: PETSc Option Table entries: [1]PETSC ERROR: [0]PETSC ERROR: -da_refine 3 -da_refine 3 [1]PETSC ERROR: [0]PETSC ERROR: -ksp_type fgmres -ksp_type fgmres [1]PETSC ERROR: [0]PETSC ERROR: -pc_type mg -pc_type mg [1]PETSC ERROR: [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to [email protected] ----------------End of Error Message -------send entire error message to [email protected] Rank 0 [Mon Oct 29 16:52:05 2018] [c7-7c1s4n2] application called MPI_Abort(MPI_COMM_WORLD, 76) - process 0 Rank 1 [Mon Oct 29 16:52:05 2018] [c7-7c1s4n2] application called MPI_Abort(MPI_COMM_WORLD, 76) - process 1 _pmiu_daemon(SIGCHLD): [NID 16438] [c7-7c1s4n2] [Mon Oct 29 16:52:05 2018] PE RANK 1 exit signal Aborted Application 19079965 exit codes: 134 Application 19079965 resources: utime ~1s, stime ~1s, Rss ~29412, inblocks ~37571, outblocks ~131660 5a6 > Application 19079968 resources: utime ~1s, stime ~1s, Rss ~29412, inblocks ~37586, outblocks ~131654
