Like you, I got this error some months ago when trying to build paraview
superbuild:
/error: unknown option `is-ancestor'//
/
It was my git version wich was too old. May be try to compile a more up
to date version of git in your home and set the path to access it.
I have installed git from
https://www.kernel.org/pub/software/scm/git/git-2.12.2.tar.xz
Patrick
Ezhilmathi Krishnasamy a écrit :
Hi,
I have followed these instructions. I am trying to install it where I
am not a root user.
Can someone help to fix this issue.
git clone --recursive
https://gitlab.kitware.com/paraview/paraview-superbuild.git
cd paraview-superbuild
git fetch origin # ensure you have the latest state from the main repo
git checkout v5.2.0 # replace `v5.2.0` with tag name of your choice
git submodule update
cd ..
mkdir build
cd build
ccmake ../paraview-superbuild
Kind regards,
Mathi
On 30 June 2017 at 18:54, Ezhilmathi Krishnasamy
<[email protected] <mailto:[email protected]>> wrote:
Hi Thanks!
When I try to install Paraview, I am getting the following error.
Could some one please tell me how to fix this issue.
I am trying to install the Paraview on a super computer to use it
for remote rendering without using the GUI, like with mesa support.
kriezh@beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD>
git clone --recursive
https://gitlab.kitware.com/paraview/paraview-superbuild.git
<https://gitlab.kitware.com/paraview/paraview-superbuild.git>
Cloning into 'paraview-superbuild'...
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
remote: Counting objects: 6723, done.
remote: Compressing objects: 100% (2459/2459), done.
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
remote: Total 6723 (delta 4451), reused 6342 (delta 4201)
Receiving objects: 100% (6723/6723), 2.05 MiB | 741 KiB/s, done.
Resolving deltas: 100% (4451/4451), done.
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
Checking out files: 100% (196/196), done.
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
Submodule 'superbuild'
(https://gitlab.kitware.com/paraview/common-superbuild.git
<https://gitlab.kitware.com/paraview/common-superbuild.git>)
registered for path 'superbuild'
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
Cloning into 'superbuild'...
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
remote: Counting objects: 6752, done.
remote: Compressing objects: 100% (2235/2235), done.
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
remote: Total 6752 (delta 4505), reused 6574 (delta 4395)
Receiving objects: 100% (6752/6752), 1.59 MiB | 592 KiB/s, done.
Resolving deltas: 100% (4505/4505), done.
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
Submodule path 'superbuild': checked out
'8f357bb5bf35419c210b3f9e0adbc9df08f565f2'
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission denied
kriezh@beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
cmake .
-- The C compiler identification is Intel 14.0.4.20140805
-- The CXX compiler identification is Intel 14.0.4.20140805
-- Cray Programming Environment 2.2.1 C
-- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc
-- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc --
works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Cray Programming Environment 2.2.1 CXX
-- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC
-- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC
-- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning at superbuild/cmake/SuperbuildUtils.cmake:242 (message):
Failed to determine if the common superbuild is an old
checkout. The
common superbuild may be out of date, but cannot be verified.:
warning:
unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>': Permission
denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>':
Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>':
Permission denied
warning: unable to access
'/afs/pdc.kth.se/home/k/kriezh/.gitconfig
<http://pdc.kth.se/home/k/kriezh/.gitconfig>':
Permission denied
error: unknown option `is-ancestor'
usage: git merge-base [-a|--all] <commit> <commit>...
or: git merge-base [-a|--all] --octopus <commit>...
or: git merge-base --independent <commit>...
-a, --all output all common ancestors
--octopus find ancestors for a single n-way merge
--independent list revs not reachable from others
Call Stack (most recent call first):
superbuild/CMakeLists.txt:28 (_superbuild_check_up_to_date)
-- Check size of void*
-- Check size of void* - done
-- Found Git: /usr/bin/git (found version "1.7.12.4")
-- Determined source version for paraview: 5.4.0
CMake Error at superbuild/cmake/SuperbuildMacros.cmake:289 (message):
The build tree appears to be inside of the git repository located at
/cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild.
This interferes with the way the superbuild applies patches to
projects and
is not supported. Please relocate the build tree to a directory
which is
not under a git repository.
Call Stack (most recent call first):
superbuild/projects/bzip2.cmake:7 (superbuild_apply_patch)
superbuild/cmake/SuperbuildMacros.cmake:477 (include)
superbuild/CMakeLists.txt:113 (_superbuild_discover_projects)
-- Configuring incomplete, errors occurred!
See also
"/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild/CMakeFiles/CMakeOutput.log".
Kind regards,
Mathi
On 30 June 2017 at 04:13, Cory Quammen <[email protected]
<mailto:[email protected]>> wrote:
On Wed, Jun 28, 2017 at 1:14 PM, Ezhilmathi Krishnasamy
<[email protected] <mailto:[email protected]>> wrote:
> Hi,
>
> Can anyone please give me some instructions how to Paraview
Superbuid
> to install and use them with out using the GUI (using the
python script to
> render the images on the cluster or super computer).
>
> I see there are some instructions in here:
> https://gitlab.kitware.com/paraview/paraview-superbuild/
<https://gitlab.kitware.com/paraview/paraview-superbuild/>
>
> But I could not find any build instructions.
Take a look again, that page includes the README.md file contents
which includes build instructions.
To build without the GUI, you should just need to set the options
ENABLE_qt4 and ENABLE_qt5 to OFF. To build with Python, set
ENABLE_python to ON.
Best regards,
Cory
>
> Kind regards,
> Mathi
>
> _______________________________________________
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>
> Visit other Kitware open-source projects at
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>
> Please keep messages on-topic and check the ParaView Wiki at:
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>
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>
--
Cory Quammen
Staff R&D Engineer
Kitware, Inc.
_______________________________________________
Powered by www.kitware.com
Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html
Please keep messages on-topic and check the ParaView Wiki at:
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Search the list archives at: http://markmail.org/search/?q=ParaView
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_______________________________________________
Powered by www.kitware.com
Visit other Kitware open-source projects at
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Please keep messages on-topic and check the ParaView Wiki at:
http://paraview.org/Wiki/ParaView
Search the list archives at: http://markmail.org/search/?q=ParaView
Follow this link to subscribe/unsubscribe:
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