Attached patch unbreaks build on MacOS X (I guess 
on *BSD too):

- stdlib.h should be included instead of malloc.h for 
    better portability
- Eliminate "r could be used uninitialized" gcc warning 

-- 
gonzo
Index: src/helper/membuf.c
===================================================================
--- src/helper/membuf.c	(revision 2400)
+++ src/helper/membuf.c	(working copy)
@@ -20,7 +20,7 @@
 
 #include <stdio.h>
 #include <stdarg.h>
-#include <malloc.h>
+#include <stdlib.h>
 #include <string.h>
 
 #include "membuf.h"
Index: src/flash/at91sam3.c
===================================================================
--- src/flash/at91sam3.c	(revision 2400)
+++ src/flash/at91sam3.c	(working copy)
@@ -2385,6 +2385,7 @@
 	if (0 == strcmp("show", argv[0])) {
 		if (who == -1) {
 		showall:
+			r = ERROR_OK;
 			for (x = 0 ; x < pChip->details.n_gpnvms ; x++) {
 				r = FLASHD_GetGPNVM(&(pChip->details.bank[0]), x, &v);
 				if (r != ERROR_OK) {
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