Hi,
I want to use openbabel conversion in python like shown below.
But I do not want to get an error message thrown like this,
instead I can use the value of the success varible.
> ./mwe.py
==============================
*** Open Babel Error in ParseSimple
SMILES string contains a character 'X' which is invalid
I already tried to set the OutputLevel, but this is not working.
Whant can I do?
TIA.
----------------------------------------------------------------
#!/usr/bin/env python3
from openbabel import openbabel
ob_log_handler = openbabel.OBMessageHandler()
ob_log_handler.SetOutputLevel(0)
openbabel.cvar.obErrorLog.SetOutputLevel(0) # also tested this
mol = openbabel.OBMol()
obConversion = openbabel.OBConversion()
obConversion.SetInAndOutFormats('smi', 'can')
success = obConversion.ReadString(mol, 'X')
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