Hello, I've been trying to use Open Babel (windows) to perform a file conversion from a log file (Gaussian) to a Tinker xyz file, while demanding the conversion to work with MM3 atom types. The problem began with trying to convert an ordinary primary amide (expecting atom type 9 in return) log file, which kept giving the atom type 151 in return. My intention is to build an automated sequence of calculations which relies heavily on your magnificent tool, and sadly I've been having the same difficulty with any amide structure (essentially my entire data set is made of amides). I assume the problem is with the log file and that the information is probably wrong at that end of the conversion, but I suppose you guys will know best.
I'd very much appreciate your response, thank you in advance, Barkai Shahar (Grad. student @ Milo group, BGU, Israel).
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