Hi Heather, I think this is a question for Knime. We don't maintain the Open Babel Knime node. I have no idea what version it uses, or what it's doing. If you want to kekulize your structures with Open Babel we can help with that, of course.
Regards, - Noel On Mon, 12 Nov 2018 at 17:01, Heather Lambert <heath...@fluorochem.co.uk> wrote: > Hello, > > > > I am using the OpenBabel Knime node as a way to convert structures from > being aromatised to kekulized. This works well by converting from mol- MDL > MOL format to sdf- MDL MOL format. > > > > However, when I apply this conversion to all structures in my original SDF > file (even if they do not need to be kekulized), I get results like this: > > > > > > What does (v0) mean on the structure? And how do I remove it? > > > > Thanks > > Heather > > > > > Heather Lambert​ > Technical Sales > Fluorochem Ltd > *+44 1457 860 111* <+44%201457%20860%20111> > *heath...@fluorochem.co.uk* <heath...@fluorochem.co.uk> > *www.fluorochem.co.uk* <http://www.fluorochem.co.uk/> > Unit 14, Graphite Way > Hadfield, Derbyshire > SK13 1QH, UK > [image: Facebook] <https://www.facebook.com/Fluorochem-1730673607219527/> > [image: LinkedIn] <https://www.linkedin.com/company/fluorochem-limited> > [image: Twitter] <https://www.twitter.com/Fluorochem> > [image: Instagram] <https://www.instagram.com/fluorochem/> > This e-mail and any files and attachments transmitted with it are > confidential and may be legally privileged. They are intended solely for > the use of the intended recipient. Any views and opinions expressed are > those of the individual author/sender and are not necessarily shared or > endorsed by Fluorochem Ltd or any associated or related company. The > content of this e-mail or any file or attachment transmitted with it may > have been changed or altered without the consent of the author. If you are > not the intended recipient of this email, you are hereby notified that any > review, dissemination, disclosure, alteration, printing, circulation or > transmission of, or any action taken or omitted in reliance on this e-mail > or any file or attachment transmitted with it is prohibited and may be > unlawful. E&OE. Registered in England Number 2049362. VAT Registered Number > 693 4408 13. Trading Address and Registered Office: Unit 14,Graphite > Way,Hadfield,Derbyshire,SK13 1QH > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >
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