Hi there, I am very new to all of this, and am looking for help with the install. I followed the instructions on the page below:
http://openbabel.org/wiki/Install_(source_code)<http://openbabel.org/docs/dev/Installation/install.html> specifically the section on Installing globally with root access. I also installed a GNU compiler according to these instructions: https://wiki.helsinki.fi/display/HUGG/GNU+compiler+install+on+Mac+OS+X and cmake prior to running these commands. I used the following commands: tar zxvf openbabel-2.4.1.tar.gz mv openbabel-2.4.1 ob-src mkdir ob-build cd ob-build cmake ../ob-src 2>&1 | tee cmake.out sudo make install Everything seemed to install, but I am looking to run the optimize plugin in pymol, and I got an error there: "Optimize plug-in needs openbabel to be installed in your system, please follow the instructions at http://openbabel.org/wiki/Get_Open_Babel”. I realized I still did not have it completely installed, so I tried the following command: export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib which “ran” with no errors. I now have several files and folders in the following directory: /usr/local/lib They are: pkgconfig (FOLDER) libinchi.dylib libinchi.0.4.1.dylib libinchi.0.dylib openbabel (FOLDER) libopenbabel.dylib libopenbabel.5.0.0.dylib libopenbabel.5.dylib cmake (FOLDER) I believe open babel is still not completely installed because I did not compile the language bindings at the time of install. I now have installed python (2.7.10), but am looking for how I can finish this install. As I said above, I’m looking to use the optimize plugin in pymol. I’m working on a Mac (running MacOS Mojave version 10.14). Would very much appreciate any help. Thanks very much!
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