Dear sirs or madams,

I have a problem on installation of openbabel.
During installation of openbabel 2.4.1 into my computer (MAC OS X 10.13.6) by 
following the instructions on http://openbabel.org/wiki/Install_(source_code), 
there were errors at the step A2.
The error message that was displayed after "make 2>&1 | tee make.out" is pasted 
below, and cmake.out and make.out files in the ob-build folder are attached to this e-mail.

[100%] Linking CXX shared module ../lib/OpenBabel.so
ld: library not found for -lperllibs=
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [lib/OpenBabel.so] Error 1
make[1]: *** [scripts/CMakeFiles/bindings_perl.dir/all] Error 2
make: *** [all] Error 2

Could you please tell me what should I do?

Best regards,
Hayashi
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy):
  The OLD behavior for policy CMP0005 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy):
  The OLD behavior for policy CMP0042 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- Using included inchi library.
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES 
wxWidgets_INCLUDE_DIRS) 
-- Checking available shared pointer...
-- Use std::shared_ptr in memory
-- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) 
(Required is at least version "2.91.0")
-- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) 
(Required is at least version "2.0.0")
-- Checking for module 'cairo'
--   No package 'cairo' found
-- Cairo found. PNG output will be supported.
-- GUI will not be built
-- Perl bindings will be compiled
-- Configuring done
CMake Warning:
  Value of bindings_perl_LIB_DEPENDS contained a newline; truncating


CMake Error at scripts/CMakeLists.txt:345 (add_library):
  Target "bindings_perl" links to item "perllibs=''

  " which has leading or trailing whitespace.  This is now an error according
  to policy CMP0004.


-- Generating done
-- Build files have been written to: /Users/thaya/ob-build
[ 15%] Built target openbabel
[ 20%] Built target plugin_ops
[ 22%] Built target plugin_charges
[ 23%] Built target plugin_fingerprints
[ 24%] Built target plugin_descriptors
[ 25%] Built target plugin_forcefields
[ 26%] Built target pubchemjsonformat
[ 27%] Built target chemdoodlejsonformat
[ 28%] Built target cdxmlformat
[ 29%] Built target rsmiformat
[ 29%] Built target chemdrawcdx
[ 30%] Built target viewmolformat
[ 30%] Built target thermoformat
[ 30%] Built target smileyformat
[ 30%] Built target dlpolyformat
[ 30%] Built target abinitformat
[ 30%] Built target pqrformat
[ 31%] Built target pubchem
[ 32%] Built target gamessukformat
[ 33%] Built target pointcloudformat
[ 33%] Built target pdbqtformat
[ 33%] Built target xedformat
[ 33%] Built target outformat
[ 33%] Built target opendxformat
[ 33%] Built target msmsformat
[ 33%] Built target fingerprintformat
[ 33%] Built target mpdformat
[ 33%] Built target groformat
[ 34%] Built target ghemicalformat
[ 35%] Built target fpsformat
[ 36%] Built target pdbformat
[ 37%] Built target nulformat
[ 37%] Built target fhformat
[ 37%] Built target adfformat
[ 38%] Built target shelxformat
[ 38%] Built target msiformat
[ 38%] Built target lmpdatformat
[ 39%] Built target jaguarformat
[ 40%] Built target featformat
[ 40%] Built target cmlreactformat
[ 40%] Built target CSRformat
[ 40%] Built target mmcifformat
[ 40%] Built target fastaformat
[ 40%] Built target cssrformat
[ 41%] Built target chemtoolformat
[ 42%] Built target png2format
[ 43%] Built target chemdrawct
[ 43%] Built target carformat
[ 43%] Built target mmodformat
[ 44%] Built target cacheformat
[ 45%] Built target orcaformat
[ 46%] Built target bgfformat
[ 46%] Built target balstformat
[ 46%] Built target crkformat
[ 46%] Built target acrformat
[ 47%] Built target lpmdformat
[ 48%] Built target fastsearchformat
[ 49%] Built target MCDLformat
[ 49%] Built target gromos96format
[ 50%] Built target titleformat
[ 50%] Built target APIInterface
[ 51%] Built target unichemformat
[ 52%] Built target gulpformat
[ 52%] Built target reportformat
[ 53%] Built target textformat
[ 54%] Built target zindoformat
[ 54%] Built target posformat
[ 54%] Built target freefracformat
[ 54%] Built target amberformat
[ 54%] Built target vaspformat
[ 54%] Built target cifformat
[ 54%] Built target pcmodelformat
[ 55%] Built target qchemformat
[ 55%] Built target siestaformat
[ 55%] Built target cacaoformat
[ 55%] Built target nwchemformat
[ 56%] Built target mopacformat
[ 57%] Built target molproformat
[ 58%] Built target xyzformat
[ 59%] Built target painterformat
[ 59%] Built target xsfformat
[ 60%] Built target PQSformat
[ 60%] Built target chem3dformat
[ 60%] Built target gausscubeformat
[ 60%] Built target hinformat
[ 60%] Built target gamessformat
[ 61%] Built target dmolformat
[ 62%] Built target boxformat
[ 62%] Built target castepformat
[ 62%] Built target turbomoleformat
[ 63%] Built target cmlformat
[ 63%] Built target exyzformat
[ 63%] Built target fchkformat
[ 64%] Built target mpqcformat
[ 65%] Built target daltonformat
[ 66%] Built target crystal09format
[ 66%] Built target yasaraformat
[ 67%] Built target gaussformat
[ 68%] Built target povrayformat
[ 69%] Built target aoforceformat
[ 69%] Built target pngformat
[ 69%] Built target moldenformat
[ 69%] Built target MNAformat
[ 70%] Built target xmlformat
[ 70%] Built target gausszmatformat
[ 70%] Built target svgformat
[ 71%] Built target alchemyformat
[ 72%] Built target copyformat
[ 72%] Built target molreport
[ 73%] Built target smilesformat
[ 73%] Built target mdffformat
[ 73%] Built target chemkinformat
[ 73%] Built target asciiformat
[ 74%] Built target stlformat
[ 75%] Built target cccformat
[ 75%] Built target tinkerformat
[ 76%] Built target fhiaimsformat
[ 76%] Built target rxnformat
[ 77%] Built target mol2format
[ 78%] Built target mdlformat
[ 78%] Built target pwscfformat
[ 79%] Built target acesformat
[ 80%] Built target obsym
[ 80%] Built target obrotamer
[ 80%] Built target obspectrophore
[ 80%] Built target obthermo
[ 80%] Built target obtautomer
[ 81%] Built target obrotate
[ 81%] Built target obenergy
[ 81%] Built target obprobe
[ 82%] Built target obfit
[ 82%] Built target obgen
[ 83%] Built target obabel
[ 83%] Built target obgrep
[ 84%] Built target obprop
[ 85%] Built target obconformer
[ 86%] Built target obminimize
[ 86%] Built target obchiral
[ 87%] Built target babel
[ 87%] Built target roundtrip
[100%] Built target test_runner
[100%] Linking CXX shared module ../lib/OpenBabel.so
ld: library not found for -lperllibs=
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [lib/OpenBabel.so] Error 1
make[1]: *** [scripts/CMakeFiles/bindings_perl.dir/all] Error 2
make: *** [all] Error 2
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss

Reply via email to