(Please cc the list on replies since that makes it a bigger chance that you
will have a good answer)
Hi,
Well, if installation failed already at the build phase it’s not at all strange
that you can’t import it from Python...
As I said earlier, the easiest way of using OpenBabel through Python on a Mac
is to install the Conda version. If you really want to install it from source,
you should use a more recent version than 2.3.1.
Kind regards,
Fredrik
On 16 jan. 2018 21:43 +0100, José Suarez Sierra <josemsuarezsie...@gmail.com>,
wrote:
> Thank you for replying,
>
> Im trying to install it from source with cmake (on mac), but, when I do make
> -j2 I get the following:
>
> build josemanuelsuarezsierra$ make -j2
> [ 8%] Built target inchi
> [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/base.o
> [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o
> In file included from
> /Users/josemanuelsuarezsierra/openbabel-2.3.1/src/alias.cpp:17:
> In file included from
> /Users/josemanuelsuarezsierra/openbabel-2.3.1/include/openbabel/alias.h:19:
> /Users/josemanuelsuarezsierra/openbabel-2.3.1/include/openbabel/shared_ptr.h:25:14:
> fatal error:
> 'tr1/memory' file not found
> #include <tr1/memory>
> ^
> 1 error generated.
> make[2]: *** [src/CMakeFiles/openbabel.dir/alias.o] Error 1
> make[2]: *** Waiting for unfinished jobs....
> make[1]: *** [src/CMakeFiles/openbabel.dir/all] Error 2
> make: *** [all] Error 2
>
> Im using python 2.7 instead of 3 version.
>
> Thank you for your supporting
> > El 15 ene 2018, a las 11:19, Fredrik Wallner <fred...@wallner.nu> escribió:
> >
> > Hi,
> >
> > Have you installed OpenBabel and in that case, how did you install it? If
> > you are not used to developing/installing from source I would suggest that
> > you use the Conda distribution of OpenBabel. Install Anaconda
> > (Anaconda.org) and then run “conda install openbabel”.
> >
> > Kind regards,
> > Fredrik
> >
> > On 15 Jan 2018, 02:26 +0100, Jose manuel Suarez Sierra
> > <josemsuarezsie...@gmail.com>, wrote:
> > > Hello,
> > >
> > > Im having an error when compiling this example code on my macOS
> > >
> > >
> > > from pybel import *
> > >
> > > for molecule in readfile("sdf","../xsaa.sdf"):
> > > print molecule.molwt
> > > I can not make it to work, it prompts the following issue:
> > > Library/Python/2.7/lib/python/site-packages/_openbabel.so
> > > Reason: image not found
> > >
> > > I’ll be so grateful if you can help me.
> > >
> > > Sincerely yours jm
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