Hi Fredrik,
Thanks for the quick reply. Yes, I did try running the make step but it exits
after an error (see below):
#############
use '==' to turn this assignment into an equality comparison
if ( p = (const char*)memchr(source, 0, maxlen) ) {
^
==
4 warnings generated.
36 warnings generated.
[ 10%] Linking C shared library ../../../lib/libinchi.dylib
[ 10%] Built target inchi
make: *** [all] Error 2
############
It might be an openbabel independent issue that I haven’t identified yet.
I’ll keep trying, if I find the solution I’ll let you know.
Meanwhile, I’m going to work with anaconda as I have it on my system as well.
Thanks again for your help.
Best,
Karim
##############################################
Karim Rafie; M.Sc., AMRSC
PhD research student
Daan van Aalten lab
School of Life Sciences
University of Dundee
Scotland / UK
From: Fredrik Wallner <fred...@wallner.nu>
Date: Wednesday, 1 March 2017 at 09:24
To: "Karim Rafie (PG Research)" <k.z.ra...@dundee.ac.uk>
Cc: "openbabel-disc...@lists.sf.net" <openbabel-disc...@lists.sf.net>
Subject: Re: [Open Babel] open babel source installation - issues
Hi,
That warning from CMake (marked as ”for project developers”) should not hinder
the compilation and installation of OpenBabel. Did you try to move on with make
and ”make install”?
If all that you need is python access to OpenBabel, you should also be able to
use the conda distribution (”conda install openbabel”) provided that you
install and use the Anaconda Python distribution
(https://www.continuum.io/downloads).
Kind regards,
Fredrik
28 feb. 2017 kl. 17:30 skrev Karim Rafie (PG Research)
<k.z.ra...@dundee.ac.uk<mailto:k.z.ra...@dundee.ac.uk>>:
Dear all,
I’m having a problem compiling openbable on my Mac (macOS Sierra, version
10.12.3). When wanting to compile I receive the following message at the end:
“CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
inchi
openbabel
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
EIGEN3_INCLUDE_DIR
-- Build files have been written to:
/Users/kzrafie/Downloads/openbabel-2.3.1/build”
I assume, due to the paths not specified in MACOSX_RPATH for inchi and
openbabel, that I’m having issues with the installation. I would usually go for
the pkg/dmg installation; however, I’m putting together a python script for
which I need to do a source installation.
You probably heard about this issue before, however I couldn’t find any decent
answers anywhere.
Best wishe,
Karim
##############################################
Karim Rafie; M.Sc., AMRSC
PhD research student
Daan van Aalten lab
School of Life Sciences
University of Dundee
Scotland / UK
The University of Dundee is a registered Scottish Charity, No: SC015096
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