Apart from editing the source code, you could generate SMILES with the "i" option (see "obabel -Hsmi") to remove chiral symbols. Alternatively, you could write a script to remove the stereochemistry programmatically after reading it in from the PDB file.
By the way, try to avoid PDB files if possible. Regards, - Noel On 3 February 2017 at 13:03, Samo Lešnik <s...@cmm.ki.si> wrote: > I am using obabel to create a number of 2D depictions of molecules. However, > I don't want to display wedge and hash bond (only general single bonds). > > An example of my command is: > > obabel input.pdb --gen2d -d -O output.svg -xd. > > So how would I be able to turn of wedges and hashed? > > > Regards. > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, SlashDot.org! http://sdm.link/slashdot > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
