The cif file doesn't contain connectivity so Open Babel has to guess. Sometimes it guess correctly.
- Noel On 25 January 2017 at 23:46, user_openbabel <hanieh.ghodr...@gmail.com> wrote: > Hi > > I am triyng to convert cif file obtained from x-ray to pdb file to add > hydrogen atoms of water. I am using Avogadro but at the end in the pdb file > I lose some bonds (connectivity). > > Does anyone know how to solve this problem? > > > > -- > View this message in context: > http://forums.openbabel.org/cif-to-pdb-tp4659688.html > Sent from the General discussion mailing list archive at Nabble.com. > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, SlashDot.org! http://sdm.link/slashdot > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
