> I'm moderately new to openbabel. Since I need to align several ligands a
> pivot conformation. The main pupose is to get rmsd values. Of course, lower
> rmsds are preferred. Which tool is recommended, obfit or obrms? I'm looking
> forward to your suggestion.
Since you say you want to align, I'd go with obfit, which will actually output
the aligned coordinates.
-Geoff
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