many thanks for thinking about it, noel. if i do not use that setting by saying:
cmake ../openbabel-2.3.2 -DCMAKE_INSTALL_PREFIX=~/openbabel/openbabel-2.3.2-install -DPYTHON_BINDINGS=ON -DEIGEN3_INCLUDE_DIR=/home/b/becdurma/include i get a linker error concerning the babel executable: /opt/cray/craype/2.01/bin/CC -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/babel.dir/babel.o -o ../bin/babel -rdynamic ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/home/b/becdurma/openbabel/openbabel-2.3.2-build/lib:: /usr/bin/ld: attempted static link of dynamic object `../lib/libopenbabel.so.4.0.2' collect2: error: ld returned 1 exit status i have no idea what to change next! vedat Am 13.01.2014 21:21, schrieb Noel O'Boyle: > I guess BUILD_SHARED=OFF isn't very well maintained. Is there some > particular reason you want to use this option? > > - Noel > > On 13 January 2014 13:43, Vedat Durmaz <dur...@zib.de> wrote: >> hi folks, >> >> for the first time, I was trying to install openbabel-2.3 by myself on a >> Cray XC30 machine. >> >> Actually, the cmake and make commands work fine (withour errors). >> However, in the bin directory, only "babel" and "roundtrip" were created >> as executables, but no "obabel" executable which I used to employ on my >> local ubuntu system. There's only a static library called libopenbabel.a >> in the lib directory. >> >> Does anyone know a reason for that behaviour? Thanks in advance, >> >> Vedat >> >> >> ps: My cmake command and output: >> >> $ cmake ../openbabel-2.3.2 >> -DCMAKE_INSTALL_PREFIX=~/openbabel/openbabel-2.3.2-install >> -DEIGEN3_INCLUDE_DIR=/home/user/include -DBUILD_SHARED=OFF >> -DCMAKE_BUILD_TYPE=Release >> -- The C compiler identification is GNU 4.8.1 >> -- The CXX compiler identification is GNU 4.8.1 >> -- Check for working C compiler: /opt/cray/craype/2.01/bin/cc >> -- Check for working C compiler: /opt/cray/craype/2.01/bin/cc -- works >> -- Detecting C compiler ABI info >> -- Detecting C compiler ABI info - done >> -- Check for working CXX compiler: /opt/cray/craype/2.01/bin/CC >> -- Check for working CXX compiler: /opt/cray/craype/2.01/bin/CC -- works >> -- Detecting CXX compiler ABI info >> -- Detecting CXX compiler ABI info - done >> -- Using included inchi library. >> -- Found LibXml2: /usr/lib64/libxml2.a (found version "2.7.6") >> -- Found ZLIB: /usr/lib64/libz.a (found version "1.2.7") >> -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) >> -- Looking for conio.h >> -- Looking for conio.h - not found >> -- Looking for sys/time.h >> -- Looking for sys/time.h - found >> -- Looking for time.h >> -- Looking for time.h - found >> -- Looking for strings.h >> -- Looking for strings.h - found >> -- Looking for rpc/xdr.h >> -- Looking for rpc/xdr.h - found >> -- Looking for regex.h >> -- Looking for regex.h - found >> -- Looking for C++ include sstream >> -- Looking for C++ include sstream - found >> -- Looking for rint >> -- Looking for rint - found >> -- Looking for snprintf >> -- Looking for snprintf - found >> -- Looking for sranddev >> -- Looking for sranddev - not found >> -- Looking for strcasecmp >> -- Looking for strcasecmp - found >> -- Looking for strncasecmp >> -- Looking for strncasecmp - found >> -- Looking for dlopen in dl >> -- Looking for dlopen in dl - found >> -- Looking for sys/types.h >> -- Looking for sys/types.h - found >> -- Looking for stdint.h >> -- Looking for stdint.h - found >> -- Looking for stddef.h >> -- Looking for stddef.h - found >> -- Check size of clock_t >> -- Check size of clock_t - done >> -- Performing Test SCANDIR_NEEDS_CONST >> -- Performing Test SCANDIR_NEEDS_CONST - Failed >> -- Performing Test HAVE_GCC_VISIBILITY >> -- Performing Test HAVE_GCC_VISIBILITY - Success >> -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") >> -- checking for module 'cairo' >> -- found cairo, version 1.8.8 >> -- Could NOT find Cairo (missing: CAIRO_LIBRARIES) >> -- Could NOT find Cairo. PNG output will NOT be supported. >> -- Looking for getopt >> -- Looking for getopt - found >> -- Looking for include file pthread.h >> -- Looking for include file pthread.h - found >> -- Looking for pthread_create >> -- Looking for pthread_create - found >> -- Found Threads: TRUE >> -- GUI will not be built >> -- Found PythonInterp: /sw/tools/python/2.7.6/generic/bin/python (found >> version "2.7.6") >> -- Configuring done >> -- Generating done >> -- Build files have been written to: >> /home/user/openbabel/openbabel-2.3.2-build >> >> >> >> ------------------------------------------------------------------------------ >> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >> Learn Why More Businesses Are Choosing CenturyLink Cloud For >> Critical Workloads, Development Environments & Everything In Between. >> Get a Quote or Start a Free Trial Today. >> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
