I find you one of the most interesting paper I know regarding this topic

http://pubs.acs.org/doi/abs/10.1021/ci990090v

The principle author P. Matos has several other papers on implementing CIP
algorithms

I have never tackle this problem myself but she is quite convinced that the
CIP are a most without alterations.

If you haven't got access to the paper I might be able to get you a copy if
you are interested in reading it





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