Hi,

Hello, I have some problems with the babel, when I convert a protein that
> have more than one monomer (dimer, tetramer and etc), the mol2 file mix the
> monomers, and I can generate the cartoon view and I can't use the mol2
> output in another softwares, for this mixture problem.
>

In which type is your protein at first (.pdb?), and why not using this
original file? Pymol (or any other software able to handle proteins, I
think) is able to read and write pdb and mol2.

Regards,
Pascal
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