Hi everyone,
I'm not quite sure if this is the correct place to ask my question, but I
couldn't find any help on google - so here I am!
On most of my systems openbabel works perfectly fine (compiled by myself and
taken from yum/apt-get).
However, I am now trying to install the python bindings for OpenBabel 2.3.1 on
a CentOS5 system. Unfortunately the bindings I could get from yum are only for
an older version so I wanted to compile everything by myself.
Until I reach make install everything looks good, but then I get an error I
never encountered before.
So here is what works:
mkdir build
cd build
cmake .. -DPYTHON_BINDINGS=ON -DPYTHON_PREFIX=<path>/openbabel-2.3.1/build
-DCMAKE_INSTALL_PREFIX=<path>/openbabel-2.3.1/build -DRUN_SWIG=ON
-DSWIG_EXECUTABLE=/<path>/swig-2.0.9/build/swig
--- then edit the CMakeCache to have proper path to eigen2,
-DEIGEN2_INCLUDE_DIR doesn't really work, somehow)
make -j4
where <path> is the path to my homedirectory.
I then get my folders with the following libraries (among others) in the
<path>/openbabel-2.3.1/build/lib/ dir:
libinchi.so -> libinchi.so.0
libinchi.so.0 -> libinchi.so.0.3.1
libinchi.so.0.3.1
libopenbabel.so -> libopenbabel.so.4
libopenbabel.so.4 -> libopenbabel.so.4.0.1
libopenbabel.so.4.0.1
If I then do 'make install', I get the following errors:
CMake Error at src/cmake_install.cmake:48 (FILE):
file INSTALL cannot find
"<path>/openbabel-2.3.1/build/lib/libopenbabel.so.4.0.1".
Call Stack (most recent call first):
cmake_install.cmake:75 (INCLUDE)
and
CMake Error at src/formats/inchi103/cmake_install.cmake:48 (FILE):
file INSTALL cannot find
"<path>/openbabel-2.3.1/build/lib/libinchi.so.0.3.1".
Call Stack (most recent call first):
src/formats/cmake_install.cmake:2017 (INCLUDE)
src/cmake_install.cmake:173 (INCLUDE)
cmake_install.cmake:75 (INCLUDE)
And if I check the library dir again, the both files are indeed not there
ALTHOUGH they were there before I started the install process. How can this
happen?
I am not very familiar with CMake so can anyone help me fix this problem or
tell me how I can install the python-bindings in a different way on CentOS5?
Thanks a lot for you help.
Cheers,
Charlotta
---
Charlotta Schärfe
Eberhard Karls University Tübingen
Applied Bioinformatics Group
Phone: +49 (0)7071 29-70462
schae...@informatik.uni-tuebingen.de
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