Hi,
I have trouble building Perl bindings in openbabel SVN branch. My system is
running 64bit CentOS 6.
To compile i use following command:
cmake ../openbabel \
-DRUN_SWIG=ON \
-DPERL_BINDINGS=ON \
-DPERL_LIBRARY=/usr/lib64/perl5/CORE/libperl.so \
-DPERL_INCLUDE_PATH=/usr/lib64/perl5/CORE/ \
-DPERL_PREFIX=/usr/lib64/perl5/ \
-DPYTHON_BINDINGS=ON \
-DPYTHON_LIBRARY=/usr/lib64/libpython2.6.so \
-DPYTHON_INCLUDE_PATH=/usr/include/python2.6/
Which leads to error:
Linking CXX shared module ../lib/OpenBabel.so
CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o: In function
`_wrap_resdat_get':
/home/maciek/openbabel/openbabel/scripts/perl/openbabel-perl.cpp:2641:
undefined reference to `pthread_getspecific'
CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o: In function
`_wrap_chainsparser_get':
/home/maciek/openbabel/openbabel/scripts/perl/openbabel-perl.cpp:2633:
undefined reference to `pthread_getspecific'
CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o: In function
`_wrap_atomtyper_get':
/home/maciek/openbabel/openbabel/scripts/perl/openbabel-perl.cpp:2625:
undefined reference to `pthread_getspecific'
CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o: In function
`_wrap_aromtyper_get':
/home/maciek/openbabel/openbabel/scripts/perl/openbabel-perl.cpp:2617:
undefined reference to `pthread_getspecific'
CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o: In function
`_wrap_isotab_get':
/home/maciek/openbabel/openbabel/scripts/perl/openbabel-perl.cpp:2609:
undefined reference to `pthread_getspecific'
CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o:/home/maciek/openbabel/openbabel/scripts/perl/openbabel-perl.cpp:2601:
more undefined references to `pthread_getspecific' follow
collect2: ld returned 1 exit status
make[2]: *** [lib/OpenBabel.so] Błąd 1
make[1]: *** [scripts/CMakeFiles/bindings_perl.dir/all] Błąd 2
To clarify, given cmake command build 2.3.1 version without problem.
----
Pozdrawiam, | Best regards,
Maciek Wójcikowski
mac...@wojcikowski.pl
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
