Hi,

I'm interested in converting a SMILES string into a 3D structure using
another similar molecule as a scaffold. The molecule to be converted
may be a substructure of the scaffold molecule with a few
modifications (e.g. amines changed to imines), or be protonated at an
alternative site (e.g. 4-amino-pyridine). Is this currently possible
with OpenBabel? I couldn't quite find what I was looking for on the
wiki...

Thanks,

Adam

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