can you specify which 3D format? I've tested this series babel -h -i cdxml benzeneACS.cdxml -o c3d1 benzeneACSvi.c3d babel -h -i c3d1 benzeneACSvi.c3d -o pdb benzeneACSviac3d.pdb
and I still have 14.9 angstrom for a benzene double bond. Did someone has already produced a stylefile (.chm?), and want to share it? that will be of tremendous help, and eventually be a fast patch On 6/3/12 12:52 PM, Douglas Houston wrote: > Yes, this is a serious problem in Chemdraw. I found that using > OpenBabel to convert to 3D then back to 2D adjusted the bonds to the > correct dimensions. > > > Quoting cadeddu<cade...@unistra.fr> on Tue, 6 Mar 2012 03:06:02 -0800 (PST): > >> seems that files converted from the cdx or cdxml have wrong bond lenght (I've >> the feeling that is related to the document properties in chemoffice); >> benzene bond lenght --> 70Angstrom >> anyone has already find a solution? I'm thinking to something like a >> "feed2babel" style, or something similar. >> thanks anyone >> >> >> >> -- >> View this message in context: >> http://forums.openbabel.org/chemdraw-bond-lenghts-tp4449415p4449415.html >> Sent from the General discussion mailing list archive at Nabble.com. >> >> ------------------------------------------------------------------------------ >> Keep Your Developer Skills Current with LearnDevNow! >> The most comprehensive online learning library for Microsoft developers >> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >> Metro Style Apps, more. Free future releases when you subscribe now! >> http://p.sf.net/sfu/learndevnow-d2d >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> >> > > > > > _____________________________________________________ > Dr. Douglas R. Houston > Lecturer > Room 3.23 > Institute of Structural and Molecular Biology > Michael Swann Building > King's Buildings > University of Edinburgh > Edinburgh, EH9 3JR, UK > Tel. 0131 650 7358 > -- Andrea Cadeddu -- Nanochemistry Laboratory Institut de Science et d'Ingénierie Supramoléculaires (I.S.I.S.) Université de Strasbourg 8, allée Gaspard Monge F-67000 Strasbourg (France) Tel: +33-(0)3-68855185 Fax: +33-(0)3-68855161 cade...@unistra.fr ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
