It seems like it compiled fine. Try "make install", and away you go.
- Noel On 27 June 2011 17:05, Mike Lipkin, BioFocus <mike.lip...@glpg.com> wrote: > Hi, > > > > Sorry if this problem is obvious to the experts but I can’t get OB to > compile > > > > Here are the messages from cmake > > > > mlip...@cpwork6.glpg.com 952% cmake ../ > > -- The C compiler identification is GNU > > -- The CXX compiler identification is GNU > > -- Check for working C compiler: /usr/bin/gcc > > -- Check for working C compiler: /usr/bin/gcc -- works > > -- Detecting C compiler ABI info > > -- Detecting C compiler ABI info - done > > -- Check for working CXX compiler: /usr/bin/c++ > > -- Check for working CXX compiler: /usr/bin/c++ -- works > > -- Detecting CXX compiler ABI info > > -- Detecting CXX compiler ABI info - done > > Using included inchi library. > > -- checking for module 'libxml-2.0' > > -- found libxml-2.0, version 2.6.26 > > -- Found LibXml2: /usr/lib64/libxml2.so > > -- Found ZLIB: /usr/lib64/libz.so > > -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) > > -- Looking for conio.h > > -- Looking for conio.h - not found > > -- Looking for sys/time.h > > -- Looking for sys/time.h - found > > -- Looking for time.h > > -- Looking for time.h - found > > -- Looking for strings.h > > -- Looking for strings.h - found > > -- Looking for rpc/xdr.h > > -- Looking for rpc/xdr.h - found > > -- Looking for regex.h > > -- Looking for regex.h - found > > -- Looking for C++ include sstream > > -- Looking for C++ include sstream - found > > -- Looking for rint > > -- Looking for rint - not found. > > -- Looking for snprintf > > -- Looking for snprintf - found > > -- Looking for sranddev > > -- Looking for sranddev - not found. > > -- Looking for strcasecmp > > -- Looking for strcasecmp - found > > -- Looking for strncasecmp > > -- Looking for strncasecmp - found > > -- Looking for dlopen in dl > > -- Looking for dlopen in dl - found > > -- Looking for sys/types.h > > -- Looking for sys/types.h - found > > -- Looking for stdint.h > > -- Looking for stdint.h - found > > -- Looking for stddef.h > > -- Looking for stddef.h - found > > -- Check size of clock_t > > -- Check size of clock_t - done > > -- Performing Test SCANDIR_NEEDS_CONST > > -- Performing Test SCANDIR_NEEDS_CONST - Failed > > -- Performing Test HAVE_GCC_VISIBILITY > > -- Performing Test HAVE_GCC_VISIBILITY - Success > > -- Found Eigen2: /usr/local/include/eigen2 > > -- Looking for getopt > > -- Looking for getopt - found > > Attempting to build the GUI > > wxWidgets not found => GUI will not be built > > -- CTest cannot determine repository type. Please set UPDATE_TYPE to 'cvs' > or 'svn'. CTest update will not work. > > -- Found PythonInterp: > /bfhome/freesoftware/coot/coot-Linux-x86_64-centos-5-gtk2-python/bin/python2.6 > > -- Configuring done > > -- Generating done > > -- Build files have been written to: > /bfhome/mlipkin/Projects/Development/Scripts/mlipkin/openbabel_new/new_version/openbabel-2.3.0/build > > > > And here are the messages from make test > > > > mlip...@cpwork6.glpg.com 957% make test > > make: Warning: File `Makefile' has modification time 5.3e+02 s in the future > > Running tests... > > Start processing tests > > Test project > /bfhome/mlipkin/Projects/Development/Scripts/mlipkin/openbabel_new/new_version/openbabel-2.3.0/build > > 1/ 57 Testing align_Test Passed > > 2/ 57 Testing automorphism_Test Passed > > 3/ 57 Testing builder_Test ***Failed Error regular > expression found in output. Regex=[FAIL] > > 4/ 57 Testing canonconsistent_Test Passed > > 5/ 57 Testing canonstable_Test Passed > > 6/ 57 Testing cistrans_Test Passed > > 7/ 57 Testing graphsym_Test Passed > > 8/ 57 Testing implicitH_Test Passed > > 9/ 57 Testing lssr_Test Passed > > 10/ 57 Testing isomorphism_Test Passed > > 11/ 57 Testing rotor_Test Passed > > 12/ 57 Testing shuffle_Test Passed > > 13/ 57 Testing smiles_Test Passed > > 14/ 57 Testing spectrophore_Test Passed > > 15/ 57 Testing squareplanar_Test Passed > > 16/ 57 Testing stereo_Test Passed > > 17/ 57 Testing stereoperception_Test Passed > > 18/ 57 Testing tetrahedral_Test Passed > > 19/ 57 Testing tetranonplanar_Test Passed > > 20/ 57 Testing tetraplanar_Test Passed > > 21/ 57 Testing uniqueid_Test Passed > > 22/ 57 Testing inchiSamples_Test ***Failed > > 23/ 57 Testing inchiSamplesTechMan_Test Passed > > 24/ 57 Testing aromatest_Test Passed > > 25/ 57 Testing atom_Test Passed > > 26/ 57 Testing bond_Test Passed > > 27/ 57 Testing cansmi_Test Passed > > 28/ 57 Testing charge-mmff94_Test ***Failed > > 29/ 57 Testing charge-gasteiger_Test Passed > > 30/ 57 Testing conversion_Test Passed > > 31/ 57 Testing datatest_Test Passed > > 32/ 57 Testing ffgaff_Test ***Failed > > 33/ 57 Testing ffghemical_Test ***Failed > > 34/ 57 Testing ffmmff94_Test Passed > > 35/ 57 Testing ffuff_Test ***Failed > > 36/ 57 Testing formalcharge_Test Passed > > 37/ 57 Testing format_Test Passed > > 38/ 57 Testing formula_Test Passed > > 39/ 57 Testing internalcoord_Test Passed > > 40/ 57 Testing invalidsmarts_Test Passed > > 41/ 57 Testing invalidsmiles_Test Passed > > 42/ 57 Testing iterators_Test Passed > > 43/ 57 Testing logp_psa_Test ***Failed Error regular > expression found in output. Regex=[not ok] > > 44/ 57 Testing math_Test Passed > > 45/ 57 Testing mol_Test Passed > > 46/ 57 Testing phmodel_Test Passed > > 47/ 57 Testing residue_Test Passed > > 48/ 57 Testing ringtest_Test Passed > > 49/ 57 Testing smartstest_Test Passed > > 50/ 57 Testing smartsparse_Test Passed > > 51/ 57 Testing smilesmatch_Test Passed > > 52/ 57 Testing unitcell_Test Passed > > 53/ 57 Testing pytest_babel ***Failed Error regular > expression found in output. Regex=[FAIL] > > 54/ 57 Testing pytest_sym ***Failed Error regular > expression found in output. Regex=[FAIL] > > 55/ 57 Testing pytest_fastsearch ***Failed Error regular > expression found in output. Regex=[FAIL] > > 56/ 57 Testing pytest_unique ***Failed Error regular > expression found in output. Regex=[FAIL] > > 57/ 57 Testing pytest_kekule ***Failed Error regular > expression found in output. Regex=[FAIL] > > > > 79% tests passed, 12 tests failed out of 57 > > > > The following tests FAILED: > > 3 - builder_Test (Failed) > > 22 - inchiSamples_Test (Failed) > > 28 - charge-mmff94_Test (Failed) > > 32 - ffgaff_Test (Failed) > > 33 - ffghemical_Test (Failed) > > 35 - ffuff_Test (Failed) > > 43 - logp_psa_Test (Failed) > > 53 - pytest_babel (Failed) > > 54 - pytest_sym (Failed) > > 55 - pytest_fastsearch (Failed) > > 56 - pytest_unique (Failed) > > 57 - pytest_kekule (Failed) > > Errors while running CTest > > make: *** [test] Error 8 > > > > Is it a problem with 64 bit – if so how can I force a 32 bit compile? > > > > Or maybe a problem with the clock skew? I think this is because the file > system is on another machine – if so how to solve? > > > > Many thanks > > > > Mike > > > > Michael Lipkin > > Senior Computational Chemist > > BioFocus > > Chesterford Research Park > > CB10 1XL, UK > > T: +044 1799 533531 > > W: www.biofocus.com > > > > Click here to sign up for our newsletter > > > > ________________________________ > "DISCLAIMER: This e-mail has been sent on behalf of BioFocus DPI Limited, a > company incorporated under the laws of England and Wales with a registration > number of 04622227 and a registered address at Chesterford Research Park, > Saffron Walden, Essex, CB10 1XL. This email and any attachments are > confidential. They may contain privileged information and are intended for > the named addressee(s) only. If you are not the named addressee do not > disseminate, distribute, copy or retain this e-mail, or any part of it, in > any manner. 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