Thank you Noel and Igor, That seemed to work. I saw no fatal errors. Cmake couldn't find my wxwidget files but I'm not interested in GUI. I attatched the cmake output. I completed the install process and the program is not working.
[jme...@n1 183]$ babel -igamout output.log -opdb babel: cannot read input format! Open Babel 2.3.0 -- Dec 9 2010 -- 15:16:34 Usage: babel [-i<input-type>] <name> [-o<output-type>] <name> Try -H option for more information. Also, it appears that I can only read one file format. [jme...@n1 183]$ babel -L formats csr -- Accelrys/MSI Quanta CSR format [Write-only] [jme...@n1 183]$ Thanks, John On 12/9/10 3:00 PM, "Igor Filippov [Contr]" <filipp...@mail.nih.gov> wrote: > > True, but it's still out of source even if build directory is in > openbabel-2.3.0 - all the object files and CMakeCache.txt are in "build" > and not intermingled with the source code. > > On Thu, 2010-12-09 at 15:00 -0500, Noel O'Boyle wrote: >> CMake recommends out-of-source builds. >> (http://www.cmake.org/Wiki/CMake_FAQ#Out-of-source_build_trees) >> >> - Noel >> >> On 9 December 2010 19:48, Igor Filippov [Contr] <filipp...@mail.nih.gov> >> wrote: >>> Hmmm, looks like the instructions published on that website are a bit >>> tricky: >>> tar zxf openbabel-2.3.0.tar.gz >>> mv openbabel-2.3.0 src >>> mkdir build >>> cmake ../src >>> >>> While this is correct, I believe the more common route (as usually described >>> for other packages) would be: >>> tar -xzf openbabel-2.3.0.tar.gz >>> cd openbabel-2.3.0 >>> mkdir build >>> cd build >>> cmake ../ >>> >>> Igor >>> >>> On Thu, 2010-12-09 at 14:37 -0500, John Merle wrote: >>>> Noel, >>>> >>>> When I run "cmake ../src" I am in the build folder inside the openbabel >>>> folder. So, the "../src" IS referring to the src directory in the source >>>> distribution. >>>> >>>> If this is wrong should I run "cmake .."? >>>> >>>> Thanks >>>> >>>> John >>>> >>>> >>>> On 12/9/10 2:25 PM, "Noel O'Boyle" <baoille...@gmail.com> wrote: >>>> >>>>> Hi John, (Please cc to the list) >>>>> >>>>> You're not alone - someone else just filed the same bug on our bug >>>>> tracker. >>>>> >>>>> When you run "cmake ../src", which directory is this exactly? It >>>>> should be the directory containing INSTALL, THANKS, etc. Just to be >>>>> clear, it is not the "src" directory included in the openbabel source >>>>> distribution. >>>>> >>>>> - Noel >>>>> >>>>> On 9 December 2010 15:37, Merle, John <merl...@wssu.edu> wrote: >>>>>> Dear Noel, >>>>>> >>>>>> Thanks for the reply. >>>>>> >>>>>> I am using the latest release OpenBabel 2.3 source distrubution and >>>>>> Cmake-2.6.4-5.el5.2.x86_64 (recently downloaded and installed). >>>>>> I executed the command: cmake ../src 2>&1 | tee cmake.out >>>>>> >>>>>> The requested output file is attached. >>>>>> >>>>>> Thank you, >>>>>> >>>>>> John >>>>>> --------------------------------------------------- >>>>>> Dr. John K. Merle >>>>>> Assistant Professor of Chemistry >>>>>> Winston-Salem State University >>>>>> 601 Martin Luther King Jr. Drive >>>>>> W. B. Atkinson Building >>>>>> Winston-Salem, NC 27110 >>>>>> Office: (336) 750-2237 >>>>>> Fax: (336) 750-2549 >>>>>> Email: merl...@wssu.edu >>>>>> --------------------------------------------------- >>>>>> >>>>>> >>>>>> >>>>>> -----Original Message----- >>>>>> From: Noel O'Boyle [mailto:baoille...@gmail.com] >>>>>> Sent: Fri 12/3/2010 6:51 AM >>>>>> To: Merle, John >>>>>> Cc: openbabel-discuss@lists.sourceforge.net >>>>>> Subject: Re: [Open Babel] cmake error in source install >>>>>> >>>>>> Hi John, >>>>>> >>>>>> Can you provide some more background? >>>>>> >>>>>> What command line did you use? What version of CMake? Is this the Open >>>>>> Babel 2.3.0 official release you are compiling? Can you delete >>>>>> CMakeCache.txt and rerun CMake attaching the complete output (you >>>>>> should pipe it all to a file). >>>>>> >>>>>> - Noel >>>>>> >>>>>> On 2 December 2010 16:35, Merle, John <merl...@wssu.edu> wrote: >>>>>>> Hello, >>>>>>> >>>>>>> I get the following errors from the cmake portion of the openbabel >>>>>>> source >>>>>>> installation on Centos5.5 machine. >>>>>>> >>>>>>> Thanks >>>>>>> >>>>>>> CMake Error at formats/inchi103/CMakeLists.txt:21 (export): >>>>>>> export FILE option given filename "" which does not have an extension >>>>>>> of >>>>>>> ".cmake". >>>>>>> >>>>>>> >>>>>>> >>>>>>> CMake Error at formats/inchi103/CMakeLists.txt:23 (install): >>>>>>> install TARGETS given no ARCHIVE DESTINATION for static library target >>>>>>> "inchi". >>>>>>> >>>>>>> >>>>>>> CMake Error at CMakeLists.txt:232 (export): >>>>>>> export FILE option given filename "" which does not have an extension >>>>>>> of >>>>>>> ".cmake". >>>>>>> >>>>>>> >>>>>>> >>>>>>> CMake Error at CMakeLists.txt:234 (install): >>>>>>> install TARGETS given no ARCHIVE DESTINATION for static library target >>>>>>> "openbabel". >>>>>>> >>>>>>> >>>>>>> -- Configuring incomplete, errors occurred! >>>>>>> >>>>>>> >>>>>>> --------------------------------------------------- >>>>>>> Dr. John K. Merle >>>>>>> Assistant Professor of Chemistry >>>>>>> Winston-Salem State University >>>>>>> 601 Martin Luther King Jr. Drive >>>>>>> W. B. Atkinson Building >>>>>>> Winston-Salem, NC 27110 >>>>>>> Office: (336) 750-2237 >>>>>>> Fax: (336) 750-2549 >>>>>>> Email: merl...@wssu.edu >>>>>>> --------------------------------------------------- >>>>>>> >>>>>>> >>>>>>> >>>>>>> ------------------------------------------------------------------------ >>>>>>> ---- >>>>>>> -- >>>>>>> Increase Visibility of Your 3D Game App & Earn a Chance To Win $500! >>>>>>> Tap into the largest installed PC base & get more eyes on your game by >>>>>>> optimizing for Intel(R) Graphics Technology. Get started today with the >>>>>>> Intel(R) Software Partner Program. Five $500 cash prizes are up for >>>>>>> grabs. >>>>>>> http://p.sf.net/sfu/intelisp-dev2dev >>>>>>> _______________________________________________ >>>>>>> OpenBabel-discuss mailing list >>>>>>> OpenBabel-discuss@lists.sourceforge.net >>>>>>> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>>> >>>> >>>> >>>> --------------------------------------------------------------------------- >>>> --- >>>> _______________________________________________ >>>> OpenBabel-discuss mailing list >>>> OpenBabel-discuss@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >>> >>> >>> >>> ---------------------------------------------------------------------------- >>> -- >>> _______________________________________________ >>> OpenBabel-discuss mailing list >>> OpenBabel-discuss@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >>> > >
cmake2.out
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