On Nov 30, 2010, at 12:33 PM, ariste...@cbm.uam.es wrote:

> Please, could you tell me the proper flag to import/export PDBQT files?

-ipdbqt for input and -opdbqt for output.

If the files have an extension of .pdbqt, it should also be automatically 
recognized without a flag.

Hope that helps,
-Geoff
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