> babel -isdf test1000.sdf -osdf test1000_nofrags.sdf -r > > I get 997 of the following errors, and only 3 molecules converted: > > *** Open Babel Error in DoTransformations > Error executing an option
Without an example file (or a section of it) it's hard to know what the problem is. Certainly the '-r' option should work to run StripSalts. Can you send us part of the SDF? If it's a secret, feel free to e-mail me personally. Thanks very much, -Geoff --- Prof. Geoffrey Hutchison Assistant Professor, Department of Chemistry University of Pittsburgh http://hutchison.chem.pitt.edu/ Office: (412) 648-0492 ------------------------------------------------------------------------------ The Next 800 Companies to Lead America's Growth: New Video Whitepaper David G. Thomson, author of the best-selling book "Blueprint to a Billion" shares his insights and actions to help propel your business during the next growth cycle. Listen Now! http://p.sf.net/sfu/SAP-dev2dev _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
