On Mon, Oct 18, 2010 at 10:33 PM, Igor Filippov [Contr] <filipp...@mail.nih.gov> wrote: > These are the formats recognized by statically linked OB: > > $ bin/babel -L formats > can -- Canonical SMILES format > copy -- Copy raw text [Write-only] > ent -- Protein Data Bank format > fix -- SMILES FIX format [Write-only] > mdl -- MDL MOL format > ml2 -- Sybyl Mol2 format > mol -- MDL MOL format > mol2 -- Sybyl Mol2 format > molreport -- Open Babel molecule report [Write-only] > pdb -- Protein Data Bank format > pov -- POV-Ray input format [Write-only] > report -- Open Babel report format [Write-only] > sd -- MDL MOL format > sdf -- MDL MOL format > smi -- SMILES format > smiles -- SMILES format > sy2 -- Sybyl Mol2 format > txt -- Title format
static_plugins.cpp only contains a few formats since including all formats in a single cpp file can take a long time/memory to compile. > The formats recognized by "regular" (dynamical) OB are numbered 147 so I > won't quote them all here, but clearly a lot are missing. Most important > for me is InChI. I have not yet attempted to include InChI in the static build. However, if you have a static inchi library, you should be able to include the inchi OB formats and link against it. > Igor > > > > > On Mon, 2010-10-18 at 16:09 -0400, Tim Vandermeersch wrote: >> On Mon, Oct 18, 2010 at 9:49 PM, Igor Filippov [Contr] >> <filipp...@mail.nih.gov> wrote: >> > Tim, >> > >> > Something still not working for me - >> > >> > Here is what I do: >> > >> > g++ -fopenmp -g -O3 -g -O2 -I/usr/local/ -D_LIB -D_MT -Wall >> > -I/usr/local//src/ -I/usr/local//src/ -I/usr/local//include/ >> > -I../openbabel-2.3.0rc1//include/ >> > -I../openbabel-2.3.0rc1//build/include/ -I/usr/local/include/ >> > -I/usr/include/GraphicsMagick -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> > -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> > -mtune=generic -pthread -u _ZTVN9OpenBabel9SMIFormatE >> > -u_ZTVN9OpenBabel12CANSMIFormatE -u _ZTVN9OpenBabel9CanSmilesE -c >> > osra.cpp >> > >> > ..... >> > >> > g++ -fopenmp -g -O3 -u _ZTVN9OpenBabel9SMIFormatE >> > -u_ZTVN9OpenBabel12CANSMIFormatE -u _ZTVN9OpenBabel9CanSmilesE -o osra >> > osra.o osra_anisotropic.o osra_ocr.o osra_openbabel.o mcdlutil.o >> > unpaper.o -L/usr/local//src/ -lpotrace -L/usr/local/ -locrad -lm >> > -lGraphicsMagick++ -lGraphicsMagick -llcms -lfreetype -lXext -lSM -lICE >> > -lX11 -lbz2 -lz -lm -lgomp -lpthread -L/usr/lib64 -L/usr/lib -L/usr/lib >> > -L/usr/local//src/ -lPgm2asc >> > -lnetpbm ../openbabel-2.3.0rc1//build/src/libopenbabel.a >> > >> > The resulting executable does not produce SMILES. >> >> You can verify that the symbols are in the executable using: >> >> objdump -t myexe | grep CanSmi >> >> > Moreover, when I try to do "make test" on statically linked babel I get >> > the following: >> > >> > 27% tests passed, 41 tests failed out of 56 >> > >> > Far cry from 100% "PASS" on dynamically linked babel. >> >> No, the tests don't work for static builds yet. Only the babel >> executable with all plugins. >> >> > Igor >> > >> > On Mon, 2010-10-18 at 14:59 -0400, Tim Vandermeersch wrote: >> >> Hi, >> >> >> >> On Mon, Oct 18, 2010 at 8:28 PM, Igor Filippov [Contr] >> >> <filipp...@mail.nih.gov> wrote: >> >> > Tim, >> >> > >> >> > Thanks, I can build my executable per your instructions and it runs >> >> > without segfaults, but doesn't seem to get the format plugins yet - the >> >> > output when I want to get SMILES for example is empty. >> >> > >> >> > I'm also looking at the page "Plugins -> Creating custom static >> >> > libraries" at http://openbabel.org/wiki/CMake >> >> > but it's so terse I cannot figure out how to use this information for a >> >> > project that does not use cmake itself. And I'm not a cmake expert at >> >> > all unfortunately... >> >> >> >> You can build the doc/examples/static_executable exe using cmake and >> >> "make VERBOSE=1". This will print the commands used for compiling. >> >> >> >> For example: >> >> >> >> [100%] Building CXX object CMakeFiles/myexe.dir/myexe.cpp.o >> >> /usr/bin/c++ -u _ZTVN9OpenBabel9ACRFormatE -u >> >> _ZTVN9OpenBabel15ADFOutputFormatE -u _ZTVN9OpenBabel14ADFInputFormatE >> >> -u _ZTVN9OpenBabel11OBT41FormatE -u _ZTVN9OpenBabel13AlchemyFormatE -u >> >> _ZTVN9OpenBabel15AmberPrepFormatE -u _ZTVN9OpenBabel14OBAPIInterfaceE >> >> -u _ZTVN9OpenBabel15BallStickFormatE -u _ZTVN9OpenBabel9BGFFormatE -u >> >> _ZTVN9OpenBabel9BoxFormatE -u _ZTVN9OpenBabel11CacaoFormatE -u >> >> _ZTVN9OpenBabel11CacheFormatE -u _ZTVN9OpenBabel9CARFormatE -u >> >> _ZTVN9OpenBabel9CCCFormatE -u _ZTVN9OpenBabel13CHEM3D1FormatE -u >> >> _ZTVN9OpenBabel13CHEM3D2FormatE -u >> >> _ZTVN9OpenBabel20ChemDrawBinaryFormatE -u >> >> _ZTVN9OpenBabel14ChemDrawFormatE -u _ZTVN9OpenBabel13ChemKinFormatE -u >> >> _ZTVN9OpenBabel9CHTFormatE -u _ZTVN9OpenBabel9CIFFormatE -u >> >> _ZTVN9OpenBabel10CopyFormatE -u _ZTVN9OpenBabel11CRK2DFormatE -u >> >> _ZTVN9OpenBabel11CRK3DFormatE -u _ZTVN9OpenBabel9CSRFormatE -u >> >> _ZTVN9OpenBabel10CSSRFormatE -u _ZTVN9OpenBabel18DlpolyConfigFormatE >> >> -u _ZTVN9OpenBabel19DlpolyHISTORYFormatE -u >> >> _ZTVN9OpenBabel10DMolFormatE -u _ZTVN9OpenBabel9XXXFormatE -u >> >> _ZTVN9OpenBabel11FASTAFormatE -u _ZTVN9OpenBabel16FastSearchFormatE -u >> >> _ZTVN9OpenBabel10FCHKFormatE -u _ZTVN9OpenBabel10FEATFormatE -u >> >> _ZTVN9OpenBabel16FenskeZmatFormatE -u _ZTVN9OpenBabel13FHIainsFormatE >> >> -u _ZTVN9OpenBabel17FingerprintFormatE -u >> >> _ZTVN9OpenBabel24FreeFormFractionalFormatE -u >> >> _ZTVN9OpenBabel18GAMESSOutputFormatE -u >> >> _ZTVN9OpenBabel17GAMESSInputFormatE -u >> >> _ZTVN9OpenBabel14GAMESSUKFormatE -u >> >> _ZTVN9OpenBabel19GAMESSUKInputFormatE -u >> >> _ZTVN9OpenBabel20GAMESSUKOutputFormatE -u >> >> _ZTVN9OpenBabel20OBGaussianCubeFormatE -u >> >> _ZTVN9OpenBabel20GaussianOutputFormatE -u >> >> _ZTVN9OpenBabel19GaussianInputFormatE -u >> >> _ZTVN9OpenBabel26GaussianZMatrixInputFormatE -u >> >> _ZTVN9OpenBabel13GenBankFormatE -u _ZTVN9OpenBabel14GhemicalFormatE -u >> >> _ZTVN9OpenBabel14GROMOS96FormatE -u _ZTVN9OpenBabel10GULPFormatE -u >> >> _ZTVN9OpenBabel9HINFormatE -u _ZTVN9OpenBabel18JaguarOutputFormatE -u >> >> _ZTVN9OpenBabel17JaguarInputFormatE -u _ZTVN9OpenBabel10MCDLFormatE -u >> >> _ZTVN9OpenBabel9MDLFormatE -u _ZTVN9OpenBabel9MOLFormatE -u >> >> _ZTVN9OpenBabel9SDFFormatE -u _ZTVN9OpenBabel11mmCIFFormatE -u >> >> _ZTVN9OpenBabel14MacroModFormatE -u _ZTVN9OpenBabel9MNAFormatE -u >> >> _ZTVN9OpenBabel10MOL2FormatE -u _ZTVN9OpenBabel14OBMoldenFormatE -u >> >> _ZTVN9OpenBabel18MolproOutputFormatE -u >> >> _ZTVN9OpenBabel17MolproInputFormatE -u >> >> _ZTVN9OpenBabel15MolReportFormatE -u _ZTVN9OpenBabel11MOPACFormatE -u >> >> _ZTVN9OpenBabel15MOPACCARTFormatE -u _ZTVN9OpenBabel14MOPACINTFormatE >> >> -u _ZTVN9OpenBabel9MPDFormatE -u _ZTVN9OpenBabel10MPQCFormatE -u >> >> _ZTVN9OpenBabel15MPQCInputFormatE -u _ZTVN9OpenBabel9MSIFormatE -u >> >> _ZTVN9OpenBabel12OBMSMSFormatE -u _ZTVN9OpenBabel9NulFormatE -u >> >> _ZTVN9OpenBabel18NWChemOutputFormatE -u >> >> _ZTVN9OpenBabel17NWChemInputFormatE -u >> >> _ZTVN9OpenBabel18OBOpenDXCubeFormatE -u _ZTVN9OpenBabel12OutputFormatE >> >> -u _ZTVN9OpenBabel13PCModelFormatE -u _ZTVN9OpenBabel9PDBFormatE -u >> >> _ZTVN9OpenBabel11PDBQTFormatE -u _ZTVN9OpenBabel9PNGFormatE -u >> >> _ZTVN9OpenBabel12PovrayFormatE -u _ZTVN9OpenBabel9PQRFormatE -u >> >> _ZTVN9OpenBabel9PQSFormatE -u _ZTVN9OpenBabel11PWscfFormatE -u >> >> _ZTVN9OpenBabel17QChemOutputFormatE -u >> >> _ZTVN9OpenBabel16QChemInputFormatE -u _ZTVN9OpenBabel12ReportFormatE >> >> -u _ZTVN9OpenBabel14SmiReactFormatE -u _ZTVN9OpenBabel9RXNFormatE -u >> >> _ZTVN9OpenBabel11ShelXFormatE -u _ZTVN9OpenBabel9SMIFormatE -u >> >> _ZTVN9OpenBabel12CANSMIFormatE -u _ZTVN9OpenBabel9FIXFormatE -u >> >> _ZTVN9OpenBabel9SVGFormatE -u _ZTVN9OpenBabel10TextFormatE -u >> >> _ZTVN9OpenBabel12ThermoFormatE -u _ZTVN9OpenBabel12TinkerFormatE -u >> >> _ZTVN9OpenBabel11TitleFormatE -u _ZTVN9OpenBabel15TurbomoleFormatE -u >> >> _ZTVN9OpenBabel13UniChemFormatE -u _ZTVN9OpenBabel10VASPFormatE -u >> >> _ZTVN9OpenBabel13ViewMolFormatE -u _ZTVN9OpenBabel9XEDFormatE -u >> >> _ZTVN9OpenBabel9XTCFormatE -u _ZTVN9OpenBabel9XYZFormatE -u >> >> _ZTVN9OpenBabel9YOBFormatE -u _ZTVN9OpenBabel11ZINDOFormatE -u >> >> _ZTVN9OpenBabel17ChemDrawXMLFormatE -u _ZTVN9OpenBabel9CMLFormatE -u >> >> _ZTVN9OpenBabel14CMLReactFormatE -u _ZTVN9OpenBabel13PubChemFormatE -u >> >> _ZTVN9OpenBabel9XMLFormatE -u _ZTVN9OpenBabel9CanSmilesE -u >> >> _ZTVN9OpenBabel14CompoundFilterE -u _ZTVN9OpenBabel8MWFilterE -u >> >> _ZTVN9OpenBabel12SmartsFilterE -u _ZTVN9OpenBabel11TitleFilterE -u >> >> _ZTVN9OpenBabel17FormulaDescriptorE -u _ZTVN9OpenBabel7FPCountE -u >> >> _ZTVN9OpenBabel11InChIFilterE -u _ZTVN9OpenBabel16SmartsDescriptorE -u >> >> _ZTVN9OpenBabel12fingerprint2E -u _ZTVN9OpenBabel9PatternFPE -u >> >> _ZTVN9OpenBabel16OBForceFieldGaffE -u >> >> _ZTVN9OpenBabel20OBForceFieldGhemicalE -u >> >> _ZTVN9OpenBabel18OBForceFieldMMFF94E -u >> >> _ZTVN9OpenBabel15OBForceFieldUFFE -u _ZTVN9OpenBabel12OpAddInIndexE -u >> >> _ZTVN9OpenBabel11OpAddPolarHE -u _ZTVN9OpenBabel11OpCanonicalE -u >> >> _ZTVN9OpenBabel11OpConformerE -u _ZTVN9OpenBabel8OpFillUCE -u >> >> _ZTVN9OpenBabel8OpEnergyE -u _ZTVN9OpenBabel10OpMinimizeE -u >> >> _ZTVN9OpenBabel7OpGen2DE -u _ZTVN9OpenBabel7OpGen3DE -u >> >> _ZTVN9OpenBabel4Op2DE -u _ZTVN9OpenBabel6OpNewSE -u >> >> _ZTVN9OpenBabel15OpPartialChargeE -u >> >> _ZTVN9OpenBabel16OpReadConformersE -u _ZTVN9OpenBabel6OpSortE -u >> >> _ZTVN9OpenBabel8OpUniqueE -u _ZTVN9OpenBabel10OpExtraOutE -u >> >> _ZTVN9OpenBabel16GasteigerChargesE -u _ZTVN9OpenBabel13MMFF94ChargesE >> >> -u _ZTVN9OpenBabel10QEqChargesE -u _ZTVN9OpenBabel12QTPIEChargesE >> >> -static -I/usr/local/include/openbabel-2.0 -o >> >> CMakeFiles/myexe.dir/myexe.cpp.o -c >> >> /home/timvdm/openbabel-gitsvn/doc/examples/static_executable/myexe.cpp >> >> Linking CXX executable myexe >> >> /usr/bin/cmake -E cmake_link_script CMakeFiles/myexe.dir/link.txt >> >> --verbose=1 >> >> /usr/bin/c++ -u _ZTVN9OpenBabel9ACRFormatE -u >> >> _ZTVN9OpenBabel15ADFOutputFormatE -u _ZTVN9OpenBabel14ADFInputFormatE >> >> -u _ZTVN9OpenBabel11OBT41FormatE -u _ZTVN9OpenBabel13AlchemyFormatE -u >> >> _ZTVN9OpenBabel15AmberPrepFormatE -u _ZTVN9OpenBabel14OBAPIInterfaceE >> >> -u _ZTVN9OpenBabel15BallStickFormatE -u _ZTVN9OpenBabel9BGFFormatE -u >> >> _ZTVN9OpenBabel9BoxFormatE -u _ZTVN9OpenBabel11CacaoFormatE -u >> >> _ZTVN9OpenBabel11CacheFormatE -u _ZTVN9OpenBabel9CARFormatE -u >> >> _ZTVN9OpenBabel9CCCFormatE -u _ZTVN9OpenBabel13CHEM3D1FormatE -u >> >> _ZTVN9OpenBabel13CHEM3D2FormatE -u >> >> _ZTVN9OpenBabel20ChemDrawBinaryFormatE -u >> >> _ZTVN9OpenBabel14ChemDrawFormatE -u _ZTVN9OpenBabel13ChemKinFormatE -u >> >> _ZTVN9OpenBabel9CHTFormatE -u _ZTVN9OpenBabel9CIFFormatE -u >> >> _ZTVN9OpenBabel10CopyFormatE -u _ZTVN9OpenBabel11CRK2DFormatE -u >> >> _ZTVN9OpenBabel11CRK3DFormatE -u _ZTVN9OpenBabel9CSRFormatE -u >> >> _ZTVN9OpenBabel10CSSRFormatE -u _ZTVN9OpenBabel18DlpolyConfigFormatE >> >> -u _ZTVN9OpenBabel19DlpolyHISTORYFormatE -u >> >> _ZTVN9OpenBabel10DMolFormatE -u _ZTVN9OpenBabel9XXXFormatE -u >> >> _ZTVN9OpenBabel11FASTAFormatE -u _ZTVN9OpenBabel16FastSearchFormatE -u >> >> _ZTVN9OpenBabel10FCHKFormatE -u _ZTVN9OpenBabel10FEATFormatE -u >> >> _ZTVN9OpenBabel16FenskeZmatFormatE -u _ZTVN9OpenBabel13FHIainsFormatE >> >> -u _ZTVN9OpenBabel17FingerprintFormatE -u >> >> _ZTVN9OpenBabel24FreeFormFractionalFormatE -u >> >> _ZTVN9OpenBabel18GAMESSOutputFormatE -u >> >> _ZTVN9OpenBabel17GAMESSInputFormatE -u >> >> _ZTVN9OpenBabel14GAMESSUKFormatE -u >> >> _ZTVN9OpenBabel19GAMESSUKInputFormatE -u >> >> _ZTVN9OpenBabel20GAMESSUKOutputFormatE -u >> >> _ZTVN9OpenBabel20OBGaussianCubeFormatE -u >> >> _ZTVN9OpenBabel20GaussianOutputFormatE -u >> >> _ZTVN9OpenBabel19GaussianInputFormatE -u >> >> _ZTVN9OpenBabel26GaussianZMatrixInputFormatE -u >> >> _ZTVN9OpenBabel13GenBankFormatE -u _ZTVN9OpenBabel14GhemicalFormatE -u >> >> _ZTVN9OpenBabel14GROMOS96FormatE -u _ZTVN9OpenBabel10GULPFormatE -u >> >> _ZTVN9OpenBabel9HINFormatE -u _ZTVN9OpenBabel18JaguarOutputFormatE -u >> >> _ZTVN9OpenBabel17JaguarInputFormatE -u _ZTVN9OpenBabel10MCDLFormatE -u >> >> _ZTVN9OpenBabel9MDLFormatE -u _ZTVN9OpenBabel9MOLFormatE -u >> >> _ZTVN9OpenBabel9SDFFormatE -u _ZTVN9OpenBabel11mmCIFFormatE -u >> >> _ZTVN9OpenBabel14MacroModFormatE -u _ZTVN9OpenBabel9MNAFormatE -u >> >> _ZTVN9OpenBabel10MOL2FormatE -u _ZTVN9OpenBabel14OBMoldenFormatE -u >> >> _ZTVN9OpenBabel18MolproOutputFormatE -u >> >> _ZTVN9OpenBabel17MolproInputFormatE -u >> >> _ZTVN9OpenBabel15MolReportFormatE -u _ZTVN9OpenBabel11MOPACFormatE -u >> >> _ZTVN9OpenBabel15MOPACCARTFormatE -u _ZTVN9OpenBabel14MOPACINTFormatE >> >> -u _ZTVN9OpenBabel9MPDFormatE -u _ZTVN9OpenBabel10MPQCFormatE -u >> >> _ZTVN9OpenBabel15MPQCInputFormatE -u _ZTVN9OpenBabel9MSIFormatE -u >> >> _ZTVN9OpenBabel12OBMSMSFormatE -u _ZTVN9OpenBabel9NulFormatE -u >> >> _ZTVN9OpenBabel18NWChemOutputFormatE -u >> >> _ZTVN9OpenBabel17NWChemInputFormatE -u >> >> _ZTVN9OpenBabel18OBOpenDXCubeFormatE -u _ZTVN9OpenBabel12OutputFormatE >> >> -u _ZTVN9OpenBabel13PCModelFormatE -u _ZTVN9OpenBabel9PDBFormatE -u >> >> _ZTVN9OpenBabel11PDBQTFormatE -u _ZTVN9OpenBabel9PNGFormatE -u >> >> _ZTVN9OpenBabel12PovrayFormatE -u _ZTVN9OpenBabel9PQRFormatE -u >> >> _ZTVN9OpenBabel9PQSFormatE -u _ZTVN9OpenBabel11PWscfFormatE -u >> >> _ZTVN9OpenBabel17QChemOutputFormatE -u >> >> _ZTVN9OpenBabel16QChemInputFormatE -u _ZTVN9OpenBabel12ReportFormatE >> >> -u _ZTVN9OpenBabel14SmiReactFormatE -u _ZTVN9OpenBabel9RXNFormatE -u >> >> _ZTVN9OpenBabel11ShelXFormatE -u _ZTVN9OpenBabel9SMIFormatE -u >> >> _ZTVN9OpenBabel12CANSMIFormatE -u _ZTVN9OpenBabel9FIXFormatE -u >> >> _ZTVN9OpenBabel9SVGFormatE -u _ZTVN9OpenBabel10TextFormatE -u >> >> _ZTVN9OpenBabel12ThermoFormatE -u _ZTVN9OpenBabel12TinkerFormatE -u >> >> _ZTVN9OpenBabel11TitleFormatE -u _ZTVN9OpenBabel15TurbomoleFormatE -u >> >> _ZTVN9OpenBabel13UniChemFormatE -u _ZTVN9OpenBabel10VASPFormatE -u >> >> _ZTVN9OpenBabel13ViewMolFormatE -u _ZTVN9OpenBabel9XEDFormatE -u >> >> _ZTVN9OpenBabel9XTCFormatE -u _ZTVN9OpenBabel9XYZFormatE -u >> >> _ZTVN9OpenBabel9YOBFormatE -u _ZTVN9OpenBabel11ZINDOFormatE -u >> >> _ZTVN9OpenBabel17ChemDrawXMLFormatE -u _ZTVN9OpenBabel9CMLFormatE -u >> >> _ZTVN9OpenBabel14CMLReactFormatE -u _ZTVN9OpenBabel13PubChemFormatE -u >> >> _ZTVN9OpenBabel9XMLFormatE -u _ZTVN9OpenBabel9CanSmilesE -u >> >> _ZTVN9OpenBabel14CompoundFilterE -u _ZTVN9OpenBabel8MWFilterE -u >> >> _ZTVN9OpenBabel12SmartsFilterE -u _ZTVN9OpenBabel11TitleFilterE -u >> >> _ZTVN9OpenBabel17FormulaDescriptorE -u _ZTVN9OpenBabel7FPCountE -u >> >> _ZTVN9OpenBabel11InChIFilterE -u _ZTVN9OpenBabel16SmartsDescriptorE -u >> >> _ZTVN9OpenBabel12fingerprint2E -u _ZTVN9OpenBabel9PatternFPE -u >> >> _ZTVN9OpenBabel16OBForceFieldGaffE -u >> >> _ZTVN9OpenBabel20OBForceFieldGhemicalE -u >> >> _ZTVN9OpenBabel18OBForceFieldMMFF94E -u >> >> _ZTVN9OpenBabel15OBForceFieldUFFE -u _ZTVN9OpenBabel12OpAddInIndexE -u >> >> _ZTVN9OpenBabel11OpAddPolarHE -u _ZTVN9OpenBabel11OpCanonicalE -u >> >> _ZTVN9OpenBabel11OpConformerE -u _ZTVN9OpenBabel8OpFillUCE -u >> >> _ZTVN9OpenBabel8OpEnergyE -u _ZTVN9OpenBabel10OpMinimizeE -u >> >> _ZTVN9OpenBabel7OpGen2DE -u _ZTVN9OpenBabel7OpGen3DE -u >> >> _ZTVN9OpenBabel4Op2DE -u _ZTVN9OpenBabel6OpNewSE -u >> >> _ZTVN9OpenBabel15OpPartialChargeE -u >> >> _ZTVN9OpenBabel16OpReadConformersE -u _ZTVN9OpenBabel6OpSortE -u >> >> _ZTVN9OpenBabel8OpUniqueE -u _ZTVN9OpenBabel10OpExtraOutE -u >> >> _ZTVN9OpenBabel16GasteigerChargesE -u _ZTVN9OpenBabel13MMFF94ChargesE >> >> -u _ZTVN9OpenBabel10QEqChargesE -u _ZTVN9OpenBabel12QTPIEChargesE >> >> -static CMakeFiles/myexe.dir/myexe.cpp.o -o myexe -rdynamic >> >> /usr/local/lib/libopenbabel.so.4.0.0 -lm -ldl -lz -Wl,-Bstatic >> >> -Wl,-rpath,/usr/local/lib: >> >> >> >> >> >> > Igor >> >> > >> >> > >> >> > On Sat, 2010-10-16 at 10:23 -0400, Tim Vandermeersch wrote: >> >> >> On Fri, Oct 15, 2010 at 11:40 PM, Igor Filippov [Contr] >> >> >> <filipp...@mail.nih.gov> wrote: >> >> >> > It builds nicely on Fedora 12, x64 system. >> >> >> > Some points: >> >> >> > >> >> >> > 1) When building with -DBUILD_SHARED=no one needs to make sure static >> >> >> > zlib exists somewhere (libz.a) otherwise the error message which >> >> >> > cmake >> >> >> > gives is somewhat confusing. >> >> >> > >> >> >> > 2) build/lib is full of dynamic libs (.so) even with BUILD_SHARED=no. >> >> >> > There is a static libopenbabel.a is build/src, which is great, but >> >> >> > linking against it gives the following error: >> >> >> > undefined reference to `OpenBabel::OBMol::FindChiralCenters()' >> >> >> > collect2: ld returned 1 exit status >> >> >> > >> >> >> > babel executable seems to be linked statically though so perhaps I'm >> >> >> > not >> >> >> > linking correctly? >> >> >> >> >> >> Something like this should work: >> >> >> >> >> >> g++ -static myexe.cpp.o -o myexe /usr/local/lib/libopenbabel.a >> >> >> -Wl,-Bstatic -lm -lz >> >> >> >> >> >> I'll reply in a separate thread with more details on static building. >> >> >> The MinGW page (http://openbabel.org/wiki/Install_%28MinGW%29) is >> >> >> updated but it doesn't address handling plugins yet. >> >> >> >> >> >> Tim >> >> >> >> >> >> > 3) The version is still set at 2.2.99 not 2.3.0 :) >> >> >> > >> >> >> > Thanks! >> >> >> > Igor >> >> >> > >> >> >> > >> >> >> > On Fri, 2010-10-15 at 16:56 -0400, Geoffrey Hutchison wrote: >> >> >> >> I have uploaded a source-code only version of the 2.3.0 release >> >> >> >> candidate 1. >> >> >> >> http://sourceforge.net/projects/openbabel/files/openbabel-snapshots/2010-10-15/openbabel-2.3.0rc1-20101015-r4206.tar.gz/download >> >> >> >> >> >> >> >> Please give this a try and see if there are glaring bugs, issues, >> >> >> >> etc. Over the next week, we will be working on fixing up the >> >> >> >> documentation the website, etc. >> >> >> >> >> >> >> >> Let us know what you think -- we look forward to a good release on >> >> >> >> Oct. 23rd. >> >> >> >> >> >> >> >> Thanks, >> >> >> >> -Geoff >> >> >> >> >> >> >> >> --- >> >> >> >> Prof. Geoffrey Hutchison >> >> >> >> Department of Chemistry >> >> >> >> University of Pittsburgh >> >> >> >> tel: (412) 648-0492 >> >> >> >> email: geo...@pitt.edu >> >> >> >> web: http://hutchison.chem.pitt.edu/ >> >> >> >> >> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> >> >> Download new Adobe(R) Flash(R) Builder(TM) 4 >> >> >> >> The new Adobe(R) Flex(R) 4 and Flash(R) Builder(TM) 4 (formerly >> >> >> >> Flex(R) Builder(TM)) enable the development of rich applications >> >> >> >> that run >> >> >> >> across multiple browsers and platforms. Download your free trials >> >> >> >> today! >> >> >> >> http://p.sf.net/sfu/adobe-dev2dev >> >> >> >> _______________________________________________ >> >> >> >> OpenBabel-Devel mailing list >> >> >> >> openbabel-de...@lists.sourceforge.net >> >> >> >> https://lists.sourceforge.net/lists/listinfo/openbabel-devel >> >> >> > >> >> >> > >> >> >> > >> >> >> > ------------------------------------------------------------------------------ >> >> >> > Download new Adobe(R) Flash(R) Builder(TM) 4 >> >> >> > The new Adobe(R) Flex(R) 4 and Flash(R) Builder(TM) 4 (formerly >> >> >> > Flex(R) Builder(TM)) enable the development of rich applications >> >> >> > that run >> >> >> > across multiple browsers and platforms. Download your free trials >> >> >> > today! >> >> >> > http://p.sf.net/sfu/adobe-dev2dev >> >> >> > _______________________________________________ >> >> >> > OpenBabel-discuss mailing list >> >> >> > OpenBabel-discuss@lists.sourceforge.net >> >> >> > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> >> >> > >> >> > >> >> > >> >> > >> > >> > >> > > > > ------------------------------------------------------------------------------ Download new Adobe(R) Flash(R) Builder(TM) 4 The new Adobe(R) Flex(R) 4 and Flash(R) Builder(TM) 4 (formerly Flex(R) Builder(TM)) enable the development of rich applications that run across multiple browsers and platforms. Download your free trials today! http://p.sf.net/sfu/adobe-dev2dev _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
