TJ > Also, it appears the residue names DA, DC, DG, DT and DU are commonly used in > pdb files. > I think these are the deoxy versions of A, C, G, T, U. > Is there any chance of getting these processed properly and maybe adding > those to OBResidueIndex namespace?
Yes, the DA, DC, DG, DT, and DU are the deoxy forms. That much was easy. > I was hoping to have every atom in the nucleic acid residues set - > ideally, to distinguish the main chain atoms (which are those anyway?), > and side chains (purine and pyridines?) Here's the standard, but if you could send me (off-list) a few RNA and DNA PDB files, I can probably put together a working version. I'm not sure the PDB atom labels always match the standard. ;-) http://www.rnabase.org/primer/ Cheers, -Geoff ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
