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https://issues.apache.org/jira/browse/CTAKES-74?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Sean Finan resolved CTAKES-74.
------------------------------
Fix Version/s: 4.0.1
Resolution: Fixed
> Tokenizer PennTreeBank breaks with certain apostrophes in tokens.
> -----------------------------------------------------------------
>
> Key: CTAKES-74
> URL: https://issues.apache.org/jira/browse/CTAKES-74
> Project: cTAKES
> Issue Type: Task
> Components: ctakes-core
> Affects Versions: 3.0-incubating
> Reporter: Pei Chen
> Priority: Critical
> Fix For: future enhancement, 4.0.1
>
>
> The new TokenizerPTB breaks with certain apostrophes such as:
> "N'theaster". This came out of 2.6 but should also exist in 2.5 as well.
> Sample Text to recreate:
> Peis doctor appoitment was cancelled due to the N'theaster.
> Exception:
> 10/8/12 12:22:47 PM - 10:
> org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Annotator
> processing failed.
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator
> processing failed.
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:409)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267)
> at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
> at
> org.apache.uima.tools.cvd.MainFrame.internalRunAE(MainFrame.java:1526)
> at org.apache.uima.tools.cvd.MainFrame.runAE(MainFrame.java:430)
> at
> org.apache.uima.tools.cvd.control.AnnotatorRerunEventHandler.actionPerformed(AnnotatorRerunEventHandler.java:40)
> at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
> at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
> at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
> at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
> at javax.swing.AbstractButton.doClick(Unknown Source)
> at javax.swing.AbstractButton.doClick(Unknown Source)
> at
> javax.swing.plaf.basic.BasicMenuItemUI$Actions.actionPerformed(Unknown Source)
> at javax.swing.SwingUtilities.notifyAction(Unknown Source)
> at javax.swing.JComponent.processKeyBinding(Unknown Source)
> at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown
> Source)
> at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown
> Source)
> at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown
> Source)
> at javax.swing.JMenuBar.processKeyBinding(Unknown Source)
> at javax.swing.KeyboardManager.fireBinding(Unknown Source)
> at javax.swing.KeyboardManager.fireKeyboardAction(Unknown Source)
> at javax.swing.JComponent.processKeyBindingsForAllComponents(Unknown
> Source)
> at javax.swing.JComponent.processKeyBindings(Unknown Source)
> at javax.swing.JComponent.processKeyEvent(Unknown Source)
> at java.awt.Component.processEvent(Unknown Source)
> at java.awt.Container.processEvent(Unknown Source)
> at java.awt.Component.dispatchEventImpl(Unknown Source)
> at java.awt.Container.dispatchEventImpl(Unknown Source)
> at java.awt.Component.dispatchEvent(Unknown Source)
> at java.awt.KeyboardFocusManager.redispatchEvent(Unknown Source)
> at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(Unknown Source)
> at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(Unknown
> Source)
> at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(Unknown
> Source)
> at java.awt.DefaultKeyboardFocusManager.dispatchEvent(Unknown Source)
> at java.awt.Component.dispatchEventImpl(Unknown Source)
> at java.awt.Container.dispatchEventImpl(Unknown Source)
> at java.awt.Window.dispatchEventImpl(Unknown Source)
> at java.awt.Component.dispatchEvent(Unknown Source)
> at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
> at java.awt.EventQueue.access$000(Unknown Source)
> at java.awt.EventQueue$1.run(Unknown Source)
> at java.awt.EventQueue$1.run(Unknown Source)
> at java.security.AccessController.doPrivileged(Native Method)
> at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
> Source)
> at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
> Source)
> at java.awt.EventQueue$2.run(Unknown Source)
> at java.awt.EventQueue$2.run(Unknown Source)
> at java.security.AccessController.doPrivileged(Native Method)
> at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
> Source)
> at java.awt.EventQueue.dispatchEvent(Unknown Source)
> at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
> at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
> at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
> at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
> at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
> at java.awt.EventDispatchThread.run(Unknown Source)
> Caused by: java.lang.StringIndexOutOfBoundsException: String index out of
> range: 0
> at java.lang.String.charAt(Unknown Source)
> at
> org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB.setNumPosition(TokenizerPTB.java:1148)
> at
> org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB.createToken(TokenizerPTB.java:1051)
> at
> org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB.tokenizeTextSegment(TokenizerPTB.java:348)
> at
> org.apache.ctakes.core.ae.TokenizerAnnotatorPTB.annotateRange(TokenizerAnnotatorPTB.java:173)
> at
> org.apache.ctakes.core.ae.TokenizerAnnotatorPTB.process(TokenizerAnnotatorPTB.java:117)
> at
> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
> ... 59 more
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