Rajendra kumar created CTAKES-523:
-------------------------------------
Summary: Trying to run build-setup.xml but not able to fix these
errors while building YTEX for CTAKES 4.0.1
Key: CTAKES-523
URL: https://issues.apache.org/jira/browse/CTAKES-523
Project: cTAKES
Issue Type: Bug
Components: ctakes-ytex
Affects Versions: 4.0.0
Environment: java 10 , ctakes installed using user guide,
Reporter: Rajendra kumar
Attachments: my_output.out
*this is the output file generated while executing the build-setup.xml file*
*command : +..\..\ant.bat build-setup.xml >output.out 2>&1+*
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts>java -cp
C:\apache-ctakes-4.0.0\lib\ant-1.9.2.jar;C:\apache-ctakes-4.0.0\lib\ant-launcher-1.9.2.jar;C:\apache-ctakes-4.0.0\lib\ant-contrib-1.0b3.jar
org.apache.tools.ant.Main -f build-setup.xml all
Buildfile: C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\build-setup.xml
dbping:
dbping:
[java] DBPing: connection succeeded
templateToConfig.init:
templateToConfig.extractTemplates:
[echo] unpacking ytex templates from
C:\apache-ctakes-4.0.0\lib\ctakes-ytex-res-4.0.0.jar to
C:\apache-ctakes-4.0.0/resources
[unzip] Expanding: C:\apache-ctakes-4.0.0\lib\ctakes-ytex-res-4.0.0.jar into
C:\apache-ctakes-4.0.0\resources
templateToConfig.updateConfig:
[echo] config.source.dir = C:\apache-ctakes-4.0.0/resources
[echo] config.generated.dir = C:\apache-ctakes-4.0.0/resources
[copy] Copying 6 files to C:\apache-ctakes-4.0.0\resources
templateToConfig:
setupDatabase:
init:
umls.check.mrconso:
[echo] umls.schema dbo
[echo] umls.catalog YTEX
[sql] Executing commands
[sql] 1 of 1 SQL statements executed successfully
[echo] mrconso.out = 1
[echo]
[delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\mrconso-check.txt
[echo] mrconso.exists = true
umls.all:
[echo] mrconso.exists = true
init:
umls.dropAuiFword:
[echo] drop ytex umls_aui_fword table
jdbc.sqlcmd:
[echo] db.schemadbo
[echo] umls.schema dbo
[echo] umls.catalog YTEX
[echo] execute ./mssql/./umls/drop_tables.sql
[copy] Copying 1 file to C:\Users\kumrajen\AppData\Local\Temp
[echo] executing C:\Users\kumrajen\AppData\Local\Temp\ytex2018208138.sql
[sql] Executing resource:
C:\Users\kumrajen\AppData\Local\Temp\ytex2018208138.sql
[sql] 2 of 2 SQL statements executed successfully
[delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex2018208138.sql
[delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex530618693use.sql
umls.setupAuiFword:
[echo] create ytex umls_aui_fword tables
jdbc.sqlcmd:
[echo] db.schemadbo
[echo] umls.schema dbo
[echo] umls.catalog YTEX
[echo] execute ./mssql/./umls/create_tables.sql
[copy] Copying 1 file to C:\Users\kumrajen\AppData\Local\Temp
[echo] executing C:\Users\kumrajen\AppData\Local\Temp\ytex600409625.sql
[sql] Executing resource:
C:\Users\kumrajen\AppData\Local\Temp\ytex600409625.sql
[sql] 2 of 2 SQL statements executed successfully
[delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex600409625.sql
[delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex385602631use.sql
[echo] setting up umls_aui_fword table. please be patient - this can take a
while
[java] log4j: reset attribute= "false".
[java] log4j: Threshold ="null".
[java] log4j: Retreiving an instance of org.apache.log4j.Logger.
[java] log4j: Setting [ProgressAppender] additivity to [false].
[java] log4j: Level value for ProgressAppender is [INFO].
[java] log4j: ProgressAppender level set to INFO
[java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
[java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
[java] log4j: Setting property [conversionPattern] to [%m].
[java] log4j: Adding appender named [noEolAppender] to category
[ProgressAppender].
[java] log4j: Retreiving an instance of org.apache.log4j.Logger.
[java] log4j: Setting [ProgressDone] additivity to [false].
[java] log4j: Level value for ProgressDone is [INFO].
[java] log4j: ProgressDone level set to INFO
[java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
[java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
[java] log4j: Setting property [conversionPattern] to [%m%n].
[java] log4j: Adding appender named [eolAppender] to category [ProgressDone].
[java] log4j: Level value for root is [INFO].
[java] log4j: root level set to INFO
[java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
[java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
[java] log4j: Setting property [conversionPattern] to [%d\{dd MMM yyyy
HH:mm:ss} %5p %c\{1} - %m%n].
[java] log4j: Adding appender named [consoleAppender] to category [root].
[java] 23 Oct 2018 16:39:19 INFO SetupAuiFirstWord - loading lvg.properties
from:/C:/apache-ctakes-4.0.0/resources/org/apache/ctakes/lvg/data/config/lvg.properties
[java] 23 Oct 2018 16:39:19 INFO ENGINE - open start - state not modified
[java] 23 Oct 2018 16:39:19 INFO ENGINE - dataFileCache open start
[java] 23 Oct 2018 16:39:19 INFO ENGINE - dataFileCache open end
[java] 23 Oct 2018 16:39:20 INFO ClassPathXmlApplicationContext - Refreshing
org.springframework.context.support.ClassPathXmlApplicationContext@c7ba306:
startup date [Tue Oct 23 16:39:20 IST 2018]; root of context hierarchy
[java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean
definitions from URL
[jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
[java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean
definitions from URL
[jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
[java] 23 Oct 2018 16:39:20 INFO DefaultListableBeanFactory - Overriding bean
definition for bean 'kernelApplicationContext': replacing [Generic bean: class
[org.springframework.context.support.ClassPathXmlApplicationContext]; scope=;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0;
autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in
URL
[jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]]
with [Generic bean: class
[org.springframework.context.support.ClassPathXmlApplicationContext]; scope=;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0;
autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in
URL
[jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]]
[java] 23 Oct 2018 16:39:20 INFO DefaultListableBeanFactory -
Pre-instantiating singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@615091b8:
defining beans [kernelApplicationContext]; root of factory hierarchy
[java] 23 Oct 2018 16:39:20 INFO ClassPathXmlApplicationContext - Refreshing
org.springframework.context.support.ClassPathXmlApplicationContext@6f0b0a5e:
startup date [Tue Oct 23 16:39:20 IST 2018]; root of context hierarchy
[java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean
definitions from class path resource
[org/apache/ctakes/ytex/beans-datasource.xml]
[java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean
definitions from class path resource
[org/apache/ctakes/ytex/beans-kernel.hbm.xml]
[java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean
definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
[java] 23 Oct 2018 16:39:20 INFO PropertyPlaceholderConfigurer - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex-default.properties]
[java] 23 Oct 2018 16:39:20 INFO PropertyPlaceholderConfigurer - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex.properties]
[java] 23 Oct 2018 16:39:20 INFO PropertyPlaceholderConfigurer - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex-umls.properties]
[java] 23 Oct 2018 16:39:20 INFO DefaultListableBeanFactory -
Pre-instantiating singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@6063d80a:
defining beans
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService];
root of factory hierarchy
[java] 23 Oct 2018 16:39:20 INFO PropertiesFactoryBean - Loading properties
file from class path resource [org/apache/ctakes/ytex/ytex.properties]
[java] 23 Oct 2018 16:39:21 INFO Version - HCANN000001: Hibernate Commons
Annotations \{4.0.2.Final}
[java] 23 Oct 2018 16:39:21 INFO Version - HHH000412: Hibernate Core
\{4.2.6.Final}
[java] 23 Oct 2018 16:39:21 INFO Environment - HHH000206: hibernate.properties
not found
[java] 23 Oct 2018 16:39:21 INFO Environment - HHH000021: Bytecode provider
name : javassist
[java] 23 Oct 2018 16:39:24 INFO Dialect - HHH000400: Using dialect:
org.hibernate.dialect.SQLServerDialect
[java] 23 Oct 2018 16:39:24 INFO TransactionFactoryInitiator - HHH000399:
Using default transaction strategy (direct JDBC transactions)
[java] 23 Oct 2018 16:39:24 INFO ASTQueryTranslatorFactory - HHH000397: Using
ASTQueryTranslatorFactory
[java] 23 Oct 2018 16:39:24 INFO UpdateTimestampsCache - HHH000250: Starting
update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
[java] 23 Oct 2018 16:39:24 INFO StandardQueryCache - HHH000248: Starting
query cache at region: org.hibernate.cache.internal.StandardQueryCache
[java] WARNING: An illegal reflective access operation has occurred
[java] WARNING: Illegal reflective access by
javassist.util.proxy.SecurityActions
(file:/C:/apache-ctakes-4.0.0/lib/javassist-3.15.0-GA.jar) to method
java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
[java] WARNING: Please consider reporting this to the maintainers of
javassist.util.proxy.SecurityActions
[java] WARNING: Use --illegal-access=warn to enable warnings of further
illegal reflective access operations
[java] WARNING: All illegal access operations will be denied in a future
release
[java] 23 Oct 2018 16:39:24 INFO HibernateTransactionManager - Using
DataSource [org.apache.commons.dbcp.BasicDataSource@1cf336fd] of Hibernate
SessionFactory for HibernateTransactionManager
[java] Exception in thread "main" java.lang.ExceptionInInitializerError
[java] at
org.apache.ctakes.ytex.tools.SetupAuiFirstWord.setupAuiFirstWord(SetupAuiFirstWord.java:190)
[java] at
org.apache.ctakes.ytex.tools.SetupAuiFirstWord.main(SetupAuiFirstWord.java:186)
[java] Caused by: org.springframework.beans.factory.access.BootstrapException:
Unable to initialize group definition. Group resource name
[classpath*:org/apache/ctakes/ytex/kernelBeanRefContext.xml], factory key
[kernelApplicationContext]; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'kernelApplicationContext' defined in URL
[jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]:
Instantiation of bean failed; nested exception is
org.springframework.beans.BeanInstantiationException: Could not instantiate
bean class
[org.springframework.context.support.ClassPathXmlApplicationContext]:
Constructor threw exception; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'gramMatrixExporter' defined in class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
nested exception is org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386)
[java] at
org.apache.ctakes.ytex.kernel.KernelContextHolder.<clinit>(KernelContextHolder.java:29)
[java] ... 2 more
[java] Caused by: org.springframework.beans.factory.BeanCreationException:
Error creating bean with name 'kernelApplicationContext' defined in URL
[jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]:
Instantiation of bean failed; nested exception is
org.springframework.beans.BeanInstantiationException: Could not instantiate
bean class
[org.springframework.context.support.ClassPathXmlApplicationContext]:
Constructor threw exception; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'gramMatrixExporter' defined in class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
nested exception is org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
[java] at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
[java] at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
[java] at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
[java] at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
[java] at
org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143)
[java] at
org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381)
[java] ... 3 more
[java] Caused by: org.springframework.beans.BeanInstantiationException: Could
not instantiate bean class
[org.springframework.context.support.ClassPathXmlApplicationContext]:
Constructor threw exception; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'gramMatrixExporter' defined in class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
nested exception is org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162)
[java] at
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110)
[java] at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280)
[java] ... 16 more
[java] Caused by: org.springframework.beans.factory.BeanCreationException:
Error creating bean with name 'gramMatrixExporter' defined in class path
resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean
failed; nested exception is org.springframework.beans.FatalBeanException:
Failed to obtain BeanInfo for class
[org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
java.beans.IntrospectionException: type mismatch between read and write methods
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:527)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
[java] at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
[java] at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
[java] at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
[java] at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
[java] at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
[java] at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93)
[java] at
java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native
Method)
[java] at
java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
[java] at
java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
[java] at
java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:488)
[java] at
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
[java] ... 18 more
[java] Caused by: org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:262)
[java] at
org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:149)
[java] at
org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:324)
[java] at
org.springframework.beans.BeanWrapperImpl.getPropertyDescriptors(BeanWrapperImpl.java:331)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.filterPropertyDescriptorsForDependencyCheck(AbstractAutowireCapableBeanFactory.java:1242)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1101)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517)
[java] ... 33 more
[java] Caused by: java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
java.desktop/java.beans.PropertyDescriptor.findPropertyType(PropertyDescriptor.java:700)
[java] at
java.desktop/java.beans.PropertyDescriptor.setReadMethod(PropertyDescriptor.java:281)
[java] at
org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:282)
[java] at
org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:180)
[java] at
org.springframework.beans.ExtendedBeanInfo.<init>(ExtendedBeanInfo.java:100)
[java] at
org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:224)
[java] ... 39 more
[java] 23 Oct 2018 16:39:24 INFO DefaultListableBeanFactory - Destroying
singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@6063d80a:
defining beans
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService];
root of factory hierarchy
[java] 23 Oct 2018 16:39:24 INFO DefaultListableBeanFactory - Destroying
singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@615091b8:
defining beans [kernelApplicationContext]; root of factory hierarchy
BUILD FAILED
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\build-setup.xml:55: The
following error occurred while executing this line:
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\data\build.xml:145: The
following error occurred while executing this line:
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\data\build.xml:263: Java
returned: 1
Total time: 17 seconds
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