See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/821/changes>
Changes: [clin] python scripts that are needed for running keras-based CNN [clin] Enable Convolutional Neural Network for event-time classification. May need further debug. NeuralEventTimeRelationsEvaluation: will evaluate pre-trained embedding features. NeuralEventTimeRelationsCNNEvaluation: will write sequece of tokens to feed in to the CNN. Both above evals will evaluate the test instances within the cleartk framework. [clin] add syntactic embedding features for classic event-event model [clin] add syntactic features for classic event-time model [clin] temporally remove confidence score from classification results for CNN implementation [clin] modify the way to generate embedding features for CNN [clin] relax the rule for removing non-contains relations ------------------------------------------ [...truncated 573 lines...] Loading model: ........................................................................................ 19 Jul 2016 19:44:24 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded. 19 Jul 2016 19:44:24 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties 19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties 19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/> 19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory) ** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory) ** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory) ** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.> ** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory) ** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.> ** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory) ** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory) ** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory) ** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory) ** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory) ** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.> ** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory) ** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.> ** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory) ** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory) ** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> 19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/> 19 Jul 2016 19:44:24 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 19 Jul 2016 19:44:24 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 19 Jul 2016 19:44:25 INFO SentenceDetector - Starting processing. 19 Jul 2016 19:44:25 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 19 Jul 2016 19:44:25 INFO LvgAnnotator - process(JCas) 19 Jul 2016 19:44:25 INFO ContextDependentTokenizerAnnotator - process(JCas) 19 Jul 2016 19:44:25 INFO POSTagger - process(JCas) 19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: old DocTimeRel:OVERLAP 19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: referred DocTimeRel:BEFORE 19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: diagnosed DocTimeRel:BEFORE 19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: cancer DocTimeRel:OVERLAP 19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: blood DocTimeRel:OVERLAP Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.724 sec Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest 19 Jul 2016 19:44:28 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ........................................................................................ 19 Jul 2016 19:44:38 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded. 19 Jul 2016 19:44:38 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties 19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties 19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/> 19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory) ** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory) ** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory) ** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.> ** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory) ** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.> ** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory) ** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory) ** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory) ** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory) ** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory) ** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.> ** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory) ** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.> ** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory) ** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory) ** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.> 19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/> 19 Jul 2016 19:44:39 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 19 Jul 2016 19:44:39 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 19 Jul 2016 19:44:39 INFO SentenceDetector - Starting processing. 19 Jul 2016 19:44:39 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 19 Jul 2016 19:44:39 INFO LvgAnnotator - process(JCas) 19 Jul 2016 19:44:39 INFO ContextDependentTokenizerAnnotator - process(JCas) 19 Jul 2016 19:44:39 INFO POSTagger - process(JCas) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) 19 Jul 2016 19:44:39 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument id: 0 argument: TimeMention sofa: _InitialView begin: 58 end: 66 id: 0 ontologyConceptArr: <null> typeID: 0 segmentID: <null> sentenceID: <null> discoveryTechnique: 0 confidence: 0.0 polarity: 0 uncertainty: 0 conditional: false generic: false subject: <null> historyOf: 0 originalText: <null> date: <null> time: <null> timeClass: <null> role: "Arg1" participatesIn: <null> RelationArgument id: 0 argument: EventMention sofa: _InitialView begin: 67 end: 76 id: 0 ontologyConceptArr: <null> typeID: 0 segmentID: <null> sentenceID: <null> discoveryTechnique: 0 confidence: 1.3807402 polarity: 0 uncertainty: 0 conditional: false generic: false subject: <null> historyOf: 0 originalText: <null> event: Event id: 0 ontologyConcept: <null> mentions: <null> discoveryTechnique: 0 confidence: 0.0 conditional: false generic: false subject: <null> polarity: 0 uncertainty: 0 historyOf: 0 properties: EventProperties contextualModality: <null> contextualAspect: <null> permanence: <null> category: <null> aspect: <null> docTimeRel: <null> degree: <null> polarity: 0 role: "Arg2" participatesIn: <null> Category: CONTAINS Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.504 sec Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest 19 Jul 2016 19:44:42 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ........Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000767580000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12) # # There is insufficient memory for the Java Runtime Environment to continue. # Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory. # An error report file with more information is saved as: # <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/hs_err_pid4708.log> Results : Tests run: 3, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled
