See <https://builds.apache.org/job/ctakes-trunk-package/426/changes>
Changes:
[tmill] Fixes to thyme readers to allow for reading deepphe data.
[tmill] Updated deprecated uimafit method call.
------------------------------------------
[...truncated 5288 lines...]
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[54,62]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as
a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[60,62]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as
a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[64,62]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as
a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[73,3]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as
a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[71,42]
[unchecked] unchecked call to
CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...) as a
member of the raw type CleartkExtractor
[WARNING] where SEARCH_T is a type-variable:
SEARCH_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[81,44]
[unchecked] unchecked call to DistanceExtractor(String,Class<? extends
Annotation>) as a member of the raw type DistanceExtractor
[WARNING]
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[98,65]
[unchecked] unchecked call to extract(JCas,T) as a member of the raw type
FeatureExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in interface FeatureExtractor1
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[98,19]
[unchecked] unchecked method invocation: method addAll in interface List is
applied to given types
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[98,65]
[unchecked] unchecked conversion
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/test/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-temporal ---
[INFO] Compiling 6 source files to
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/target/test-classes>
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal
---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-temporal ---
[INFO] Building jar:
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/target/ctakes-temporal-3.2.3-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-temporal ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @
ctakes-temporal ---
[INFO] Installing
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/target/ctakes-temporal-3.2.3-SNAPSHOT.jar>
to
/home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-temporal/3.2.3-SNAPSHOT/ctakes-temporal-3.2.3-SNAPSHOT.jar
[INFO] Installing
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/pom.xml>
to
/home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-temporal/3.2.3-SNAPSHOT/ctakes-temporal-3.2.3-SNAPSHOT.pom
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES YTEX Web 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
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(847 B at 0.9 KB/sec)
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[WARNING] Could not transfer metadata org.glassfish:javax.el/maven-metadata.xml
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from
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(http://repository.apache.org/snapshots): Error transferring file: Server
returned HTTP response code: 502 for URL:
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from
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[WARNING] Failure to transfer
org.glassfish:javax.el:3.0.1-b06-SNAPSHOT/maven-metadata.xml from
http://repository.apache.org/snapshots was cached in the local repository,
resolution will not be reattempted until the update interval of Nexus has
elapsed or updates are forced. Original error: Could not transfer metadata
org.glassfish:javax.el:3.0.1-b06-SNAPSHOT/maven-metadata.xml from/to Nexus
(http://repository.apache.org/snapshots): Error transferring file: Server
returned HTTP response code: 502 for URL:
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from
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Downloading:
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org.glassfish:javax.el:3.0.1-b07-SNAPSHOT/maven-metadata.xml from/to Nexus
(http://repository.apache.org/snapshots): Error transferring file: Server
returned HTTP response code: 503 for URL:
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from
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[WARNING] Failure to transfer
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resolution will not be reattempted until the update interval of Nexus has
elapsed or updates are forced. Original error: Could not transfer metadata
org.glassfish:javax.el:3.0.1-b07-SNAPSHOT/maven-metadata.xml from/to Nexus
(http://repository.apache.org/snapshots): Error transferring file: Server
returned HTTP response code: 503 for URL:
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from
http://repository.apache.org/snapshots/org/glassfish/javax.el/3.0.1-b07-SNAPSHOT/maven-metadata.xml
Downloading:
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [2.887s]
[INFO] Apache cTAKES common type system .................. SUCCESS [5.780s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.566s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.579s]
[INFO] Apache cTAKES core ................................ SUCCESS [3.448s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.422s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [1.384s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.473s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [0.992s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [0.985s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [8.721s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.515s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.806s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [57.562s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.660s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.547s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [1.341s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [3.473s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.872s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [6.228s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.692s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [38.288s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [8.649s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.860s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [12.418s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [5.522s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [5.410s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [0.886s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [4.921s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.537s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [4.798s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.355s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.566s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.645s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.101s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.687s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [1.904s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [4.107s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [0.755s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [37.378s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [35.948s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.241s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [30.090s]
[INFO] Apache cTAKES YTEX Web ............................ FAILURE [6:31.561s]
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 12:16.658s
[INFO] Finished at: Wed May 18 11:55:42 UTC 2016
[INFO] Final Memory: 116M/962M
[INFO] ------------------------------------------------------------------------
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal on project ctakes-ytex-web: Could not resolve
dependencies for project org.apache.ctakes:ctakes-ytex-web:war:3.2.3-SNAPSHOT:
Failed to collect dependencies for
[org.apache.ctakes:ctakes-ytex:jar:3.2.3-SNAPSHOT (compile),
org.apache.ctakes:ctakes-ytex-res:jar:3.2.3-SNAPSHOT (compile),
org.springframework:spring-web:jar:3.1.2.RELEASE (compile),
com.sun.faces:jsf-api:jar:2.1.3 (compile), com.sun.faces:jsf-impl:jar:2.1.3
(compile), org.icefaces:icefaces:jar:2.0.2 (compile),
org.icefaces:icefaces-ace:jar:2.0.2 (compile),
org.icefaces:icefaces-compat:jar:2.0.2 (compile),
backport-util-concurrent:backport-util-concurrent:jar:3.1 (compile),
net.sf.jsr107cache:jsr107cache:jar:1.0 (compile),
org.apache.cxf:cxf-rt-frontend-jaxws:jar:2.7.8 (compile),
org.apache.cxf:cxf-rt-frontend-jaxrs:jar:2.7.8 (compile),
org.apache.cxf:cxf-rt-transports-http:jar:2.7.8 (compile),
org.apache.cxf:cxf-rt-databinding-aegis:jar:2.7.8 (compile),
javax.servlet.jsp:jsp-api:jar:2.2 (compile), javax.servlet:jstl:jar:1.2
(compile), commons-el:commons-el:jar:1.0 (compile),
org.glassfish.web:el-impl:jar:2.2 (compile),
org.eclipse.jetty:jetty-server:jar:9.1.0.M0 (compile),
org.eclipse.jetty:jetty-runner:jar:9.1.0.M0 (compile),
org.eclipse.jetty:jetty-jsp:jar:9.1.0.M0 (compile)]: Failed to read artifact
descriptor for org.glassfish:javax.el:jar:3.0.1-b06-SNAPSHOT: Could not
transfer artifact org.glassfish:javax.el:pom:3.0.1-b06-SNAPSHOT from/to Nexus
(http://repository.apache.org/snapshots): Error transferring file: Server
returned HTTP response code: 503 for URL:
http://repository.apache.org/snapshots/org/glassfish/javax.el/3.0.1-b06-SNAPSHOT/javax.el-3.0.1-b06-SNAPSHOT.pom
from
http://repository.apache.org/snapshots/org/glassfish/javax.el/3.0.1-b06-SNAPSHOT/javax.el-3.0.1-b06-SNAPSHOT.pom
-> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-web
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[JENKINS] Archiving
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Compressed 153.66 KB of artifacts by 20.8% relative to #425
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org.apache.ctakes/ctakes-regression-test/3.2.3-SNAPSHOT/ctakes-regression-test-3.2.3-SNAPSHOT.pom
[JENKINS] Archiving
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[JENKINS] Archiving
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org.apache.ctakes/ctakes-ytex-uima/3.2.3-SNAPSHOT/ctakes-ytex-uima-3.2.3-SNAPSHOT.jar
[JENKINS] Archiving
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[JENKINS] Archiving
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[JENKINS] Archiving
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[JENKINS] Archiving
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